7NSG | pdb_00007nsg

Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with HIP-B

PDB DOI: https://doi.org/10.2210/pdb7NSG/pdb
EM Map EMD-12566: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): Yes
Membrane Protein: Yes OPM PDBTM MemProtMD

Deposited: 2021-03-05 Released: 2022-03-16
Deposition Author(s): Baronina, A., Pike, A.C.W., Yu, X., Dong, Y.Y., Shintre, C.A., Tessitore, A., Chu, A., Rotty, B., Venkaya, S., Mukhopadhyay, S.M.M., Borkowska, O., Chalk, R., Shrestha, L., Burgess-Brown, N.A., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Han, S., Carpenter, E.P., Structural Genomics Consortium (SGC)
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC), Wellcome Trust

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.34 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with HIP-B

Baronina, A., Pike, A.C.W., Yu, X., Dong, Y.Y., Shintre, C.A., Tessitore, A., Chu, A., Rotty, B., Venkaya, S., Mukhopadhyay, S.M.M., Borkowska, O., Chalk, R., Shrestha, L., Burgess-Brown, N.A., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Han, S., Carpenter, E.P.

To be published.

Macromolecule Content

Total Structure Weight: 174.1 kDa
Atom Count: 10,356
Modeled Residue Count: 1,290
Deposited Residue Count: 1,461
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Excitatory amino acid transporter 3	A, B, C	487	Homo sapiens	Mutation(s): 2 Gene Names: SLC1A1, EAAC1, EAAT3 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P43005 (Homo sapiens) Explore P43005 Go to UniProtKB: P43005
PHAROS: P43005 GTEx: ENSG00000106688
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P43005
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PC1 Query on PC1 Download:Ideal Coordinates CCD File SDF format, chain AA [auth C] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain Q [auth B] SDF format, chain R [auth B] SDF format, chain S [auth B] SDF format, chain W [auth C] SDF format, chain X [auth C] SDF format, chain Y [auth C] SDF format, chain Z [auth C] MOL2 format, chain AA [auth C] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain R [auth B] MOL2 format, chain S [auth B] MOL2 format, chain W [auth C] MOL2 format, chain X [auth C] MOL2 format, chain Y [auth C] MOL2 format, chain Z [auth C] mmCIF format, chain AA [auth C] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain K [auth A] mmCIF format, chain O [auth B] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain R [auth B] mmCIF format, chain S [auth B] mmCIF format, chain W [auth C] mmCIF format, chain X [auth C] mmCIF format, chain Y [auth C] mmCIF format, chain Z [auth C]	AA [auth C] G [auth A] H [auth A] I [auth A] J [auth A] AA [auth C], G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], O [auth B], P [auth B], Q [auth B], R [auth B], S [auth B], W [auth C], X [auth C], Y [auth C], Z [auth C]	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE C₄₄ H₈₈ N O₈ P NRJAVPSFFCBXDT-HUESYALOSA-N		Interactions Focus chain AA [auth C] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain W [auth C] Focus chain X [auth C] Focus chain Y [auth C] Focus chain Z [auth C] Interactions & Density Focus chain AA [auth C] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth B] Focus chain W [auth C] Focus chain X [auth C] Focus chain Y [auth C] Focus chain Z [auth C]
Y01 Query on Y01 Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain N [auth B] SDF format, chain V [auth C] MOL2 format, chain F [auth A] MOL2 format, chain N [auth B] MOL2 format, chain V [auth C] mmCIF format, chain F [auth A] mmCIF format, chain N [auth B] mmCIF format, chain V [auth C]	F [auth A], N [auth B], V [auth C]	CHOLESTEROL HEMISUCCINATE C₃₁ H₅₀ O₄ WLNARFZDISHUGS-MIXBDBMTSA-N		Interactions Focus chain F [auth A] Focus chain N [auth B] Focus chain V [auth C] Interactions & Density Focus chain F [auth A] Focus chain N [auth B] Focus chain V [auth C]
UR8 (Subject of Investigation/LOI) Query on UR8 Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain M [auth B] SDF format, chain U [auth C] MOL2 format, chain E [auth A] MOL2 format, chain M [auth B] MOL2 format, chain U [auth C] mmCIF format, chain E [auth A] mmCIF format, chain M [auth B] mmCIF format, chain U [auth C]	E [auth A], M [auth B], U [auth C]	(-)-3-Hydroxy-4,5,6,6a-tetrahydro-3aH-pyrrolo[3,4-d]isoxazole-6-carboxylic acid C₆ H₈ N₂ O₄ IOOKKDXVJPSSSC-BXXZVTAOSA-N		Interactions Focus chain E [auth A] Focus chain M [auth B] Focus chain U [auth C] Interactions & Density Focus chain E [auth A] Focus chain M [auth B] Focus chain U [auth C]
UR5 (Subject of Investigation/LOI) Query on UR5 Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain L [auth B] SDF format, chain T [auth C] MOL2 format, chain D [auth A] MOL2 format, chain L [auth B] MOL2 format, chain T [auth C] mmCIF format, chain D [auth A] mmCIF format, chain L [auth B] mmCIF format, chain T [auth C]	D [auth A], L [auth B], T [auth C]	(+)-3-Hydroxy-4,5,6,6a-tetrahydro-3aH-pyrrolo[3,4-d]isoxazole-6-carboxylic acid C₆ H₈ N₂ O₄ IOOKKDXVJPSSSC-HZLVTQRSSA-N		Interactions Focus chain D [auth A] Focus chain L [auth B] Focus chain T [auth C] Interactions & Density Focus chain D [auth A] Focus chain L [auth B] Focus chain T [auth C]