7NH3 | pdb_00007nh3

Nematocida Huwe1 in open conformation.

PDB DOI: https://doi.org/10.2210/pdb7NH3/pdb
EM Map EMD-12319: EMDB EMDataResource

Classification: LIGASE
Organism(s): Nematocida sp. ERTm5
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2021-02-09 Released: 2022-03-02
Deposition Author(s): Petrova, O., Grishkovskaya, I., Grabarczyk, D.B., Kessler, D., Haselbach, D., Clausen, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 6.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7NH3

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of HUWE1: One ring to ubiquitinate them all

Grabarrczyk, D.B., Petrova, O.A., Haselbach, D., Kessler, D., Clausen, T.

To be published.

Macromolecule Content

Total Structure Weight: 287.75 kDa
Atom Count: 17,417
Modeled Residue Count: 2,138
Deposited Residue Count: 2,490
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase HUWE1	A	2,490	Nematocida sp. ERTm5	Mutation(s): 0 Gene Names: NEIG_01557
UniProt
Find proteins for A0ACD6BA07 (Nematocida sp. ERTm5) Explore A0ACD6BA07 Go to UniProtKB: A0ACD6BA07
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BA07
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 6.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.1
MODEL REFINEMENT	PHENIX

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2022-03-02

Deposition Author(s):

Grishkovskaya, I.

Grabarczyk, D.B.

Revision History (Full details and data files)

Version 1.0: 2022-03-02
Type: Initial release
Version 1.1: 2023-05-24
Changes: Refinement description, Structure summary
Version 1.2: 2023-07-26
Changes: Other
Version 1.3: 2024-07-10
Changes: Data collection, Refinement description
Version 1.4: 2025-07-09
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.