7MT1

Crystal structure of Human Platelet-activating factor acetylhydrolase IB subunit beta (PAFAH1B1)

• PDB DOI: https://doi.org/10.2210/pdb7MT1/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2021-05-12 Released: 2021-06-09 
• Deposition Author(s): Hutchinson, A., Seitova, A., Dong, A., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Halabelian, L., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.197 
• R-Value Work: 0.177 
• R-Value Observed: 0.177 

Starting Model: experimental

Literature

Crystal structure of Human Platelet-activating factor acetylhydrolase IB subunit beta (PAFAH1B1)

Hutchinson, A., Seitova, A., Dong, A., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Halabelian, L., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 39.11 kDa 
• Atom Count: 2,822 
• Modelled Residue Count: 314 
• Deposited Residue Count: 343 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Platelet-activating factor acetylhydrolase IB subunit beta	A	343	Homo sapiens	Mutation(s): 0  Gene Names: PAFAH1B1, LIS1, MDCR, MDS, PAFAHA
UniProt & NIH Common Fund Data Resources
Find proteins for P43034 (Homo sapiens) Explore P43034  Go to UniProtKB:  P43034
PHAROS:  P43034 GTEx:  ENSG00000007168

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
UNX	C [auth A], D [auth A], E [auth A], F [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 0.197 
• R-Value Work: 0.177 
• R-Value Observed: 0.177 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.728	α = 90
b = 68.572	β = 101.28
c = 69.549	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-06-09 
Deposition Author(s): Hutchinson, A., Seitova, A., Dong, A., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Halabelian, L., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2021-06-09
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Database references, Refinement description