Site 2 of the Yersinia pestis substrate-binding protein YfeA is a dynamic surface metal-binding site
Radka, C.D., Aller, S.G.(2021) Acta Crystallogr F Struct Biol Commun 77: 286-293
Experimental Data Snapshot
Starting Model: experimental
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(2021) Acta Crystallogr F Struct Biol Commun 77: 286-293
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Periplasmic chelated iron-binding protein YfeA | 323 | Yersinia pestis | Mutation(s): 0  Gene Names: yfeA, YPO2439, y1897, YP_2227 | ||
UniProt | |||||
Find proteins for Q56952 (Yersinia pestis) Explore Q56952  Go to UniProtKB:  Q56952 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q56952 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | E [auth A], H [auth B], J [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
FE (Subject of Investigation/LOI) Query on FE | C [auth A], F [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
MN (Subject of Investigation/LOI) Query on MN | D [auth A], G [auth B], I [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 67.09 | α = 90 |
b = 75.85 | β = 90 |
c = 106.55 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |