7LVY

Crystal Structure of Tetur04g02350

• PDB DOI: https://doi.org/10.2210/pdb7LVY/pdb

• Classification: TRANSFERASE
• Organism(s): Tetranychus urticae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-02-26 Released: 2022-03-02 
• Deposition Author(s): Danehsian, L., Kluza, A., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.
• Funding Organization(s): United States Department of Agriculture (USDA)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.219 
• R-Value Work: 0.182 
• R-Value Observed: 0.183 

Starting Model: experimental

Literature

Crystal Structure of Tetur04g02350

Danehsian, L., Kluza, A., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 53.46 kDa 
• Atom Count: 3,885 
• Modelled Residue Count: 431 
• Deposited Residue Count: 461 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-glycosyltransferase 203A2	A	461	Tetranychus urticae	Mutation(s): 0  Gene Names: 107359436, UGT203A2
UniProt
Find proteins for T1K1R5 (Tetranychus urticae) Explore T1K1R5  Go to UniProtKB:  T1K1R5

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UDP (Subject of Investigation/LOI)	B [auth A]	URIDINE-5'-DIPHOSPHATE C9 H14 N2 O12 P2 XCCTYIAWTASOJW-XVFCMESISA-N
BGC (Subject of Investigation/LOI)	C [auth A], D [auth A]	beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.219 
• R-Value Work: 0.182 
• R-Value Observed: 0.183 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.159	α = 90
b = 61.596	β = 106.15
c = 78.861	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-03-02 
Deposition Author(s): Danehsian, L., Kluza, A., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.

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Funding Organization	Location	Grant Number
United States Department of Agriculture (USDA)	United States	2020-67014-31179

Revision History  

• Version 1.0: 2022-03-02
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description