7L04 | pdb_00007l04

Crystal Structure of Adeno-Associated Virus Porcine Origin capsid protein in complex with Importin-alpha 2

PDB DOI: https://doi.org/10.2210/pdb7L04/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Adeno-associated virus - Po1, Mus musculus
Expression System: Escherichia coli BL21(DE3), Escherichia coli
Mutation(s): No

Deposited: 2020-12-11 Released: 2021-02-24
Deposition Author(s): Hoad, M., Forwood, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.26 Å
R-Value Free:
0.234 (Depositor), 0.239 (DCC)
R-Value Work:
0.215 (Depositor), 0.223 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
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This is version 2.3 of the entry. See complete history.

Literature

Crystal Structure of Adeno-Associated Virus Porcine Origin capsid protein in complex with Importin-alpha 2

Hoad, M., Forwood, J.

To be published.

Macromolecule Content

Total Structure Weight: 56.53 kDa
Atom Count: 3,394
Modeled Residue Count: 436
Deposited Residue Count: 520
Unique protein chains: 2

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VP1	A [auth C]	10	Adeno-associated virus - Po1	Mutation(s): 0
UniProt
Find proteins for C0LA97 (Adeno-associated virus - Po1) Explore C0LA97 Go to UniProtKB: C0LA97
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C0LA97
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Importin subunit alpha-1	B [auth E]	510	Mus musculus	Mutation(s): 0 Gene Names: Kpna2, Rch1
UniProt & NIH Common Fund Data Resources
Find proteins for P52293 (Mus musculus) Explore P52293 Go to UniProtKB: P52293
IMPC: MGI:103561
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P52293
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.26 Å
R-Value Free: 0.234 (Depositor), 0.239 (DCC)
R-Value Work: 0.215 (Depositor), 0.223 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.424	α = 90
b = 89.35	β = 90
c = 99.685	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
Aimless	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-02-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-02-24
Type: Initial release
Version 2.0: 2021-10-13
Changes: Atomic model, Database references, Structure summary
Version 2.1: 2023-09-27
Changes: Data collection
Version 2.2: 2023-10-18
Changes: Refinement description
Version 2.3: 2024-01-10
Changes: Data collection, Experimental preparation

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.