7KY1

Molecular basis for control of antibiotic production by a bacterial hormones


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Molecular basis for control of antibiotic production by a bacterial hormone.

Zhou, S.Bhukya, H.Malet, N.Harrison, P.J.Rea, D.Belousoff, M.J.Venugopal, H.Sydor, P.K.Styles, K.M.Song, L.Cryle, M.J.Alkhalaf, L.M.Fulop, V.Challis, G.L.Corre, C.

(2021) Nature 590: 463-467

  • DOI: https://doi.org/10.1038/s41586-021-03195-x
  • Primary Citation of Related Structures:  
    6SRN, 7KY1

  • PubMed Abstract: 

    Actinobacteria produce numerous antibiotics and other specialized metabolites that have important applications in medicine and agriculture 1 . Diffusible hormones frequently control the production of such metabolites by binding TetR family transcriptional repressors (TFTRs), but the molecular basis for this remains unclear 2 . The production of methylenomycin antibiotics in Streptomyces coelicolor A3(2) is initiated by the binding of 2-alkyl-4-hydroxymethylfuran-3-carboxylic acid (AHFCA) hormones to the TFTR MmfR 3 . Here we report the X-ray crystal structure of an MmfR-AHFCA complex, establishing the structural basis for hormone recognition. We also elucidate the mechanism for DNA release upon hormone binding through the single-particle cryo-electron microscopy structure of an MmfR-operator complex. DNA binding and release assays with MmfR mutants and synthetic AHFCA analogues define the role of individual amino acid residues and hormone functional groups in ligand recognition and DNA release. These findings will facilitate the exploitation of actinobacterial hormones and their associated TFTRs in synthetic biology and in the discovery of new antibiotics.


  • Organizational Affiliation

    Department of Chemistry, University of Warwick, Coventry, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TetR family transcriptional regulator214Streptomyces coelicolorMutation(s): 0 
Gene Names: mmfR
UniProt
Find proteins for Q9JN89 (Streptomyces coelicolor)
Explore Q9JN89 
Go to UniProtKB:  Q9JN89
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JN89
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 
  • Space Group: C 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.5α = 90
b = 115.72β = 90
c = 53.09γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
SHELXDEphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Royal SocietyUnited KingdomBB/M022765/1
Royal SocietyUnited KingdomUF090255
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M017982/1

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-03
    Type: Initial release
  • Version 1.1: 2021-02-17
    Changes: Database references
  • Version 1.2: 2021-03-03
    Changes: Database references
  • Version 1.3: 2024-03-06
    Changes: Advisory, Data collection, Database references