7KSN | pdb_00007ksn

Crystal Structure of Sugarwin

PDB DOI: https://doi.org/10.2210/pdb7KSN/pdb

Classification: ANTIFUNGAL PROTEIN
Organism(s): Saccharum hybrid cultivar SP80-3280
Expression System: Komagataella pastoris
Mutation(s): No

Deposited: 2020-11-23 Released: 2021-09-22
Deposition Author(s): Maia, L.B.L., Pereira, H.M., Henrique-Silva, F., Garratt, R.C., Silva Filho, M.C.
Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.51 Å
R-Value Free:
0.185 (Depositor), 0.191 (DCC)
R-Value Work:
0.163 (Depositor), 0.169 (DCC)
R-Value Observed:
0.164 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Structural and Evolutionary Analyses of PR-4 SUGARWINs Points to a Different Pattern of Protein Function

Maia, L.B.L., Pereira, H.D., Garratt, R.C., Brandao-Neto, J., Henrique-Silva, F., Toyama, D., Dias, R.O., Bachega, J.F.R., Peixoto, J.V., Silva-Filho, M.C.

(2021) Frontiers In Plant Science 12: 1884

DOI: https://doi.org/10.3389/fpls.2021.734248

Macromolecule Content

Total Structure Weight: 26.2 kDa
Atom Count: 2,194
Modeled Residue Count: 248
Deposited Residue Count: 248
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sugarwin	A, B	124	Saccharum hybrid cultivar SP80-3280	Mutation(s): 0
UniProt
Find proteins for A0A059Q1L6 (Saccharum hybrid cultivar R570) Explore A0A059Q1L6 Go to UniProtKB: A0A059Q1L6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A059Q1L6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.51 Å
R-Value Free: 0.185 (Depositor), 0.191 (DCC)
R-Value Work: 0.163 (Depositor), 0.169 (DCC)
R-Value Observed: 0.164 (Depositor)

Space Group: F 4₁ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 227.471	α = 90
b = 227.471	β = 90
c = 227.471	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
xia2	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-09-22

Deposition Author(s):

Henrique-Silva, F.

Silva Filho, M.C.

Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2014/50275-9

Revision History (Full details and data files)

Version 1.0: 2021-09-22
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description
Version 1.2: 2024-10-30
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.