7JRK | pdb_00007jrk

The Structure of BamE from Pseudomonas aeruginosa

PDB DOI: https://doi.org/10.2210/pdb7JRK/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-08-12 Released: 2021-10-13
Deposition Author(s): Bi, M., Noinaj, N.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.71 Å
R-Value Free:
0.259 (Depositor), 0.259 (DCC)
R-Value Work:
0.242 (Depositor), 0.241 (DCC)
R-Value Observed:
0.243 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of BamE from Pseudomonas aeruginosa

Bi, M., Noinaj, N.

To be published.

Macromolecule Content

Total Structure Weight: 34.43 kDa
Atom Count: 1,446
Modeled Residue Count: 176
Deposited Residue Count: 308
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein assembly factor BamE	A, B	154	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: bamE, omlA, oprX, PA4765
UniProt
Find proteins for O68562 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore O68562 Go to UniProtKB: O68562
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O68562
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.71 Å
R-Value Free: 0.259 (Depositor), 0.259 (DCC)
R-Value Work: 0.242 (Depositor), 0.241 (DCC)
R-Value Observed: 0.243 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.402	α = 90
b = 59.402	β = 90
c = 62.104	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-10-13

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R01GM127884
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	1R01GM127896

Revision History (Full details and data files)

Version 1.0: 2021-10-13
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.