7JR7 | pdb_00007jr7

Cryo-EM structure of ABCG5/G8 in complex with Fab 2E10 and 11F4

PDB DOI: https://doi.org/10.2210/pdb7JR7/pdb
EM Map EMD-22443: EMDB EMDataResource

Classification: TRANSLOCASE/IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Komagataella pastoris, Homo sapiens
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD

Deposited: 2020-08-11 Released: 2021-04-07
Deposition Author(s): Huang, C.S., Yu, X., Min, X., Wang, Z., Zhang, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Cryo-EM structure of ABCG5/G8 in complex with modulating antibodies

Zhang, H., Huang, C.S., Yu, X., Lee, J., Vaish, A., Chen, Q., Zhou, M., Wang, Z., Min, X.

(2021) Commun Biol 4: 526

DOI: https://doi.org/10.1038/s42003-021-02039-8

Macromolecule Content

Total Structure Weight: 243.12 kDa
Atom Count: 15,799
Modeled Residue Count: 2,020
Deposited Residue Count: 2,192
Unique protein chains: 6

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family G member 5	A	651	Homo sapiens	Mutation(s): 0 Gene Names: ABCG5 EC: 7.6.2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H222 (Homo sapiens) Explore Q9H222 Go to UniProtKB: Q9H222
PHAROS: Q9H222 GTEx: ENSG00000138075
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9H222
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family G member 8	B	673	Homo sapiens	Mutation(s): 0 Gene Names: ABCG8 EC: 7.6.2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H221 (Homo sapiens) Explore Q9H221 Go to UniProtKB: Q9H221
PHAROS: Q9H221 GTEx: ENSG00000143921
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9H221
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab 11F4 heavy chain	C	220	Homo sapiens	Mutation(s): 0

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab 11F4 light chain	D	213	Homo sapiens	Mutation(s): 0

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab 2E10 heavy chain	E	223	Homo sapiens	Mutation(s): 0

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| 3D Structure

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab 2E10 light chain	F	212	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.14

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2021-04-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-04-07
Type: Initial release
Version 1.1: 2021-05-12
Changes: Database references
Version 1.2: 2024-10-30
Changes: Data collection, Database references, Structure summary