Faecal microbiota-dependent phenol production from tyrosine
Oikawa, D., Byun, Z., Gotoh, A., Katoh, T., Suzuki, C., Kikuchi, K., Mikami, B., Katayama, T., Nakayama, T., Abe, T.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tyrosine phenol-lyase | 456 | Pantoea agglomerans | Mutation(s): 0  Gene Names: tpl EC: 4.1.99.2 | ||
UniProt | |||||
Find proteins for P31011 (Enterobacter agglomerans) Explore P31011  Go to UniProtKB:  P31011 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P31011 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PLP (Subject of Investigation/LOI) Query on PLP | BA [auth B], E [auth A], JA [auth C], YA [auth D] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N | |||
CIT (Subject of Investigation/LOI) Query on CIT | AA [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N | |||
PEG Query on PEG | F [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | AB [auth D] BB [auth D] CA [auth B] CB [auth D] DA [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 111.516 | α = 90 |
b = 161.077 | β = 90 |
c = 100.146 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Japan Agency for Medical Research and Development (AMED) | Japan | 20ak0101127h002 |