Structural basis for Flavin-containing opine dehydrogenase from Aureimonas altamirensis
Yoshiwara, K., Watanabe, S., Watanabe, Y.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycine/D-amino acid oxidase | 390 | Aureimonas altamirensis DSM 21988 | Mutation(s): 0  Gene Names: SAMN02745911_3969 | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FAD (Subject of Investigation/LOI) Query on FAD | C [auth A], M [auth B] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N | |||
PEG Query on PEG | P [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
SO4 Query on SO4 | D [auth A], E [auth A], F [auth A], L [auth B], N [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | G [auth A] H [auth A] I [auth A] J [auth A] K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 105.727 | α = 90 |
b = 105.727 | β = 90 |
c = 261.837 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
PHENIX | model building |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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Not funded | -- |