7FFK

The 0.84 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with palmitoleic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.84 Å
  • R-Value Free: 
    0.131 (Depositor), 0.130 (DCC) 
  • R-Value Work: 
    0.118 (Depositor), 0.120 (DCC) 
  • R-Value Observed: 
    0.119 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted P6GClick on this verticalbar to view detailsBest fitted PAMClick on this verticalbar to view details

This is version 1.1 of the entry. See complete history


Literature

The 0.84 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with palmitoleic acid

Sugiyama, S.Kakinouchi, K.Matsuoka, S.Tsuchikawa, H.Sonoyama, M.Inoue, Y.Hayashi, F.Murata, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fatty acid-binding protein, heart133Homo sapiensMutation(s): 0 
Gene Names: FABP3FABP11MDGI
UniProt & NIH Common Fund Data Resources
Find proteins for P05413 (Homo sapiens)
Explore P05413 
Go to UniProtKB:  P05413
PHAROS:  P05413
GTEx:  ENSG00000121769 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05413
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.84 Å
  • R-Value Free:  0.131 (Depositor), 0.130 (DCC) 
  • R-Value Work:  0.118 (Depositor), 0.120 (DCC) 
  • R-Value Observed: 0.119 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.536α = 90
b = 69.298β = 90
c = 33.818γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted P6GClick on this verticalbar to view detailsBest fitted PAMClick on this verticalbar to view details

Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Science and TechnologyJapanJPMJTM19DC
Japan Science and TechnologyJapanJPMJER1005
Japan Society for the Promotion of Science (JSPS)Japan19K06588
Other privateJamaica09-003-005

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-27
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description