7F2O

Cryo-EM structure of the type 2 bradykinin receptor in complex with the bradykinin and an Gq protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular basis for kinin selectivity and activation of the human bradykinin receptors.

Yin, Y.L.Ye, C.Zhou, F.Wang, J.Yang, D.Yin, W.Wang, M.W.Xu, H.E.Jiang, Y.

(2021) Nat Struct Mol Biol 28: 755-761

  • DOI: https://doi.org/10.1038/s41594-021-00645-y
  • Primary Citation of Related Structures:  
    7EIB, 7F2O

  • PubMed Abstract: 

    Bradykinin and kallidin are endogenous kinin peptide hormones that belong to the kallikrein-kinin system and are essential to the regulation of blood pressure, inflammation, coagulation and pain control. Des-Arg 10 -kallidin, the carboxy-terminal des-Arg metabolite of kallidin, and bradykinin selectively activate two G protein-coupled receptors, type 1 and type 2 bradykinin receptors (B1R and B2R), respectively. The hyperactivation of bradykinin receptors, termed 'bradykinin storm', is associated with pulmonary edema in COVID-19 patients, suggesting that bradykinin receptors are important targets for COVID-19 intervention. Here we report two G protein-coupled complex structures of human B1R and B2R bound to des-Arg 10 -kallidin and bradykinin, respectively. Combined with functional analysis, our structures reveal the mechanism of ligand selectivity and specific activation of the bradykinin receptor. These findings also provide a framework for guiding drug design targeting bradykinin receptors for the treatment of inflammation, cardiovascular disorders and COVID-19.


  • Organizational Affiliation

    The CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
G subunit q (Gi1-Gq chimeric)361Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1377Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ARG-PRO-PRO-GLY-PHE-SER-PRO-PHE-ARGC [auth D]9Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P01042 (Homo sapiens)
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PHAROS:  P01042
GTEx:  ENSG00000113889 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
B2 bradykinin receptorD [auth R]595Homo sapiensMutation(s): 1 
Gene Names: BDKRB2BKR2
Membrane Entity: Yes 
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PHAROS:  P30411
GTEx:  ENSG00000168398 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
single Fab chain (svFv16)E [auth S]248synthetic constructMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2F [auth Y]71Bos taurusMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2018YFA0507002
National Natural Science Foundation of China (NSFC)China31770796
National Natural Science Foundation of China (NSFC)China81872915
National Natural Science Foundation of China (NSFC)China82073904
National Natural Science Foundation of China (NSFC)China81773792
National Natural Science Foundation of China (NSFC)China81973373

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-13
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Data collection, Structure summary