7EWP

Cryo-EM structure of human GPR158 in complex with RGS7-Gbeta5 in a 2:1:1 ratio


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the class C orphan GPCR GPR158 in complex with RGS7-G beta 5.

Jeong, E.Kim, Y.Jeong, J.Cho, Y.

(2021) Nat Commun 12: 6805-6805

  • DOI: https://doi.org/10.1038/s41467-021-27147-1
  • Primary Citation of Related Structures:  
    7EWL, 7EWP, 7EWR

  • PubMed Abstract: 

    GPR158, a class C orphan GPCR, functions in cognition, stress-induced mood control, and synaptic development. Among class C GPCRs, GPR158 is unique as it lacks a Venus flytrap-fold ligand-binding domain and terminates Gαi/o protein signaling through the RGS7-Gβ5 heterodimer. Here, we report the cryo-EM structures of GPR158 alone and in complex with one or two RGS7-Gβ5 heterodimers. GPR158 dimerizes through Per-Arnt-Sim-fold extracellular and transmembrane (TM) domains connected by an epidermal growth factor-like linker. The TM domain (TMD) reflects both inactive and active states of other class C GPCRs: a compact intracellular TMD, conformations of the two intracellular loops (ICLs) and the TMD interface formed by TM4/5. The ICL2, ICL3, TM3, and first helix of the cytoplasmic coiled-coil provide a platform for the DHEX domain of one RGS7 and the second helix recruits another RGS7. The unique features of the RGS7-binding site underlie the selectivity of GPR158 for RGS7.


  • Organizational Affiliation

    Department of Life Science, Pohang University of Science and Technology, Pohang, Republic of Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable G-protein coupled receptor 158
A, B
1,138Homo sapiensMutation(s): 0 
Gene Names: GPR158
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T848 (Homo sapiens)
Explore Q5T848 
Go to UniProtKB:  Q5T848
PHAROS:  Q5T848
GTEx:  ENSG00000151025 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5T848
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Regulator of G-protein signaling 7530Homo sapiensMutation(s): 0 
Gene Names: RGS7
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P49802 (Homo sapiens)
Explore P49802 
Go to UniProtKB:  P49802
PHAROS:  P49802
GTEx:  ENSG00000182901 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP49802
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit beta-5395Homo sapiensMutation(s): 0 
Gene Names: GNB5
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O14775 (Homo sapiens)
Explore O14775 
Go to UniProtKB:  O14775
PHAROS:  O14775
GTEx:  ENSG00000069966 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14775
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)2021R1A2C301335711
National Research Foundation (NRF, Korea)2017M3A9F6029736
Other privateSSTF-BA1602-14

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-01
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references
  • Version 1.2: 2024-11-06
    Changes: Data collection, Structure summary