Structural analysis of the HDC Y334F mutant
Komori, H., Nitta, Y.(2021) J Biol Macromol 21: 69-74
- DOI: https://doi.org/10.14533/jbm.21.69
Experimental Data Snapshot
Starting Model: experimental
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(2021) J Biol Macromol 21: 69-74
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histidine decarboxylase | 481 | Homo sapiens | Mutation(s): 2  Gene Names: HDC EC: 4.1.1.22 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P19113 (Homo sapiens) Explore P19113  Go to UniProtKB:  P19113 | |||||
PHAROS:  P19113 GTEx:  ENSG00000140287  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P19113 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PLP Query on PLP | C [auth A], D [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CSX Query on CSX | A, B | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.902 | α = 90 |
b = 57.654 | β = 106.297 |
c = 117.647 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Society for the Promotion of Science (JSPS) | Japan | 16K07272 |