Structural analysis of EcoT38I restriction endonuclease
Kita, K., Mikami, B.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
EcoT38I restriction endonuclease | 351 | Peduovirus P2 | Mutation(s): 0  Gene Names: ecoT38IR | ![]() | |
UniProt | |||||
Find proteins for Q83VS8 (Peduovirus P2) Explore Q83VS8  Go to UniProtKB:  Q83VS8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q83VS8 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*CP*TP*CP*AP*CP*G)-3') | C [auth E] | 13 | Escherichia coli | ![]() | |
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*CP*GP*TP*GP*AP*GP*CP*TP*CP*TP*GP*C)-3') | D [auth F] | 13 | Escherichia coli | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE (Subject of Investigation/LOI) Query on PGE | P [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
TRS (Subject of Investigation/LOI) Query on TRS | G [auth A], H [auth A], Q [auth B], R [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
GOL (Subject of Investigation/LOI) Query on GOL | I [auth A] J [auth A] K [auth A] L [auth A] S [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA (Subject of Investigation/LOI) Query on CA | E [auth A], F [auth A], N [auth B], W [auth F] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL (Subject of Investigation/LOI) Query on CL | M [auth A], X [auth F] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA (Subject of Investigation/LOI) Query on NA | O [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 156.291 | α = 90 |
b = 156.291 | β = 90 |
c = 173.049 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | 16380061 |