7E7A | pdb_00007e7a

Crystal structure of apo ENL YEATS domain T3 mutant

PDB DOI: https://doi.org/10.2210/pdb7E7A/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2021-02-25 Released: 2021-07-07
Deposition Author(s): Li, Y., Li, H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å
R-Value Free:
0.230 (Depositor), 0.233 (DCC)
R-Value Work:
0.213 (Depositor), 0.213 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7E7A

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of ENL YEATS domain T1 mutant in complex with histone H3 acetylation at K27

Li, Y., Li, H.

To be published.

Macromolecule Content

Total Structure Weight: 73.31 kDa
Atom Count: 4,655
Modeled Residue Count: 550
Deposited Residue Count: 620
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein ENL	A, B, C, D	155	Homo sapiens	Mutation(s): 1 Gene Names: MLLT1, ENL, LTG19, YEATS1
UniProt & NIH Common Fund Data Resources
Find proteins for Q03111 (Homo sapiens) Explore Q03111 Go to UniProtKB: Q03111
PHAROS: Q03111 GTEx: ENSG00000130382
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q03111
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å
R-Value Free: 0.230 (Depositor), 0.233 (DCC)
R-Value Work: 0.213 (Depositor), 0.213 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.316	α = 90
b = 88.258	β = 90
c = 167.008	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-07-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	91753203
National Natural Science Foundation of China (NSFC)	China	31725014
National Natural Science Foundation of China (NSFC)	China	31871283
National Natural Science Foundation of China (NSFC)	China	31922016

Revision History (Full details and data files)

Version 1.0: 2021-07-07
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.