Observation of the GPC production during hydrolysis of LPC by GDPD D60A from Pyrococcus furiosus DSM 3638
Wang, Y.H., Wang, J., Wang, F.H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycerophosphodiester phosphodiesterase | 255 | Pyrococcus furiosus DSM 3638 | Mutation(s): 1  Gene Names: PF2003 | ![]() | |
UniProt | |||||
Find proteins for Q8TZI9 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8TZI9  Go to UniProtKB:  Q8TZI9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8TZI9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PLM (Subject of Investigation/LOI) Query on PLM | B [auth A] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N | |||
CHT (Subject of Investigation/LOI) Query on CHT | C [auth A] | CHOLINE ION C5 H14 N O OEYIOHPDSNJKLS-UHFFFAOYSA-N | |||
MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 46.92 | α = 90 |
b = 70.12 | β = 90 |
c = 90.5 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
MOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | 31725022 |
National Natural Science Foundation of China (NSFC) | China | 31972014 |