Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases
Fujishiro, T., Takaoka, K.(2023) Nat Commun 
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
(2023) Nat Commun 
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Hydroxylamine reductase | A, B, C [auth K], D [auth M] | 506 | Methanothermobacter marburgensis str. Marburg | Mutation(s): 0  Gene Names: hcp, MTBMA_c00390 EC: 1.7.99.1 | ![]() |
UniProt | |||||
Find proteins for D9PYV4 (Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)) Explore D9PYV4  Go to UniProtKB:  D9PYV4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D9PYV4 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SF4 Query on SF4 | F [auth A], I [auth B], L [auth K], O [auth M] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
FS2 (Subject of Investigation/LOI) Query on FS2 | E [auth A], H [auth B], K, N [auth M] | FE-S-O HYBRID CLUSTER Fe4 O3 S2 DEAINXNPDRNZAH-UHFFFAOYSA-N | |||
FE Query on FE | G [auth A], J [auth B], M [auth K], P [auth M] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CSS Query on CSS | A, B, C [auth K], D [auth M] | L-PEPTIDE LINKING | C3 H7 N O2 S2 | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 67.95 | α = 90 |
b = 67.95 | β = 90 |
c = 469.26 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Society for the Promotion of Science (JSPS) | Japan | 17K14510 |