Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile
Wang, T., Yang, L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific demethylase 4D | 330 | Homo sapiens | Mutation(s): 0  Gene Names: KDM4D, JHDM3D, JMJD2D EC: 1.14.11.66 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6B0I6 (Homo sapiens) Explore Q6B0I6  Go to UniProtKB:  Q6B0I6 | |||||
PHAROS:  Q6B0I6 GTEx:  ENSG00000186280  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6B0I6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HR0 (Subject of Investigation/LOI) Query on HR0 | B [auth A] | 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile C11 H7 N5 O FIRSAIIBSBCBTF-UHFFFAOYSA-N | |||
FE Query on FE | C [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 71.635 | α = 90 |
b = 71.635 | β = 90 |
c = 151.486 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |