Download MendeleyCrystal structure of Catabolite repressor activator (Apo)
Neetu, N., Katiki, M., Kumar, P.To be published.
7DOB
Crystal structure of Catabolite repressor activator (Apo)
- PDB DOI: https://doi.org/10.2210/pdb7DOB/pdb
- Classification: GENE REGULATION
- Organism(s): Escherichia coli 536
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-12-13 Released: 2021-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.273
- R-Value Work: 0.227
- R-Value Observed: 0.229
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Catabolite repressor/activator | 357 | Escherichia coli 536 | Mutation(s): 0 Gene Names: ECP_0082 |  | |
UniProt | |||||
Find proteins for A0A454A0X5 (Escherichia coli O6:K15:H31 (strain 536 / UPEC)) Explore A0A454A0X5 Go to UniProtKB: A0A454A0X5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A454A0X5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| EDO (Subject of Investigation/LOI) Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.273
- R-Value Work: 0.227
- R-Value Observed: 0.229
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 102.577 | α = 90 |
| b = 102.577 | β = 90 |
| c = 160.328 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2021-12-22 Deposition Author(s): Neetu, N., Katiki, M., Kumar, P.
Revision History (Full details and data files)
- Version 1.0: 2021-12-22
Type: Initial release - Version 1.1: 2023-11-29
Changes: Data collection, Refinement description
