7DN5 | pdb_00007dn5

The cryo-EM structure of human papillomavirus type 58 pseudovirus

PDB DOI: https://doi.org/10.2210/pdb7DN5/pdb
EM Map EMD-30781: EMDB EMDataResource

Classification: VIRUS
Organism(s): human papillomavirus 58
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2020-12-08 Released: 2021-01-20
Deposition Author(s): He, M.Z., Chi, X., Zha, Z.H., Zheng, Q.B., Li, S.W., Xia, N.S.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 7DN5

This is version 1.1 of the entry. See complete history.

Literature

Structural basis for the shared neutralization mechanism of three classes of human papillomavirus type 58 antibodies with disparate modes of binding

He, M.Z., Li, S.W.

To be published.

Macromolecule Content

Total Structure Weight: 354.62 kDa
Atom Count: 22,109
Modeled Residue Count: 2,787
Deposited Residue Count: 3,144
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein L1	A [auth B] B [auth A] C D E A [auth B], B [auth A], C, D, E, F	524	human papillomavirus 58	Mutation(s): 0 Gene Names: L1
UniProt
Find proteins for P26535 (Human papillomavirus 58) Explore P26535 Go to UniProtKB: P26535
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P26535
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.11 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-01-20

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	U1705283

Revision History (Full details and data files)

Version 1.0: 2021-01-20
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.