7D11 | pdb_00007d11

Solution structure of a WKRY DNA-binding domain

PDB DOI: https://doi.org/10.2210/pdb7D11/pdb

Classification: TRANSCRIPTION
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-09-12 Released: 2021-09-15
Deposition Author(s): Li, Q.W., Hu, Y.F., Jin, C.W.
Funding Organization(s): National Basic Research Program of China (973 Program)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 7D11

This is version 1.2 of the entry. See complete history.

Literature

Structure of a WKRY DNA-binding domain

Li, Q.W., Hu, Y.F., Jin, C.W.

To be published.

Macromolecule Content

Total Structure Weight: 9.66 kDa
Atom Count: 641
Modeled Residue Count: 79
Deposited Residue Count: 83
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
WRKY transcription factor 1	A	83	Arabidopsis thaliana	Mutation(s): 0 Gene Names: WRKY1, ZAP1, At2g04880, F1O13.1, F28I8.34
UniProt
Find proteins for Q9SI37 (Arabidopsis thaliana) Explore Q9SI37 Go to UniProtKB: Q9SI37
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9SI37
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-09-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Basic Research Program of China (973 Program)	China	2016YFA0501201

Revision History (Full details and data files)

Version 1.0: 2021-09-15
Type: Initial release
Version 1.1: 2023-06-14
Changes: Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.