7CQH | pdb_00007cqh

Complex of TRP_CBS2 and Calmodulin_Clobe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 
    0.253 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.214 (Depositor), 0.235 (DCC) 
  • R-Value Observed: 
    0.216 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7CQH

This is version 1.1 of the entry. See complete history

Literature

Calmodulin binds to Drosophila TRP with an unexpected mode.

Chen, W.Shen, Z.Asteriti, S.Chen, Z.Ye, F.Sun, Z.Wan, J.Montell, C.Hardie, R.C.Liu, W.Zhang, M.

(2021) Structure 29: 330-344.e4

  • DOI: https://doi.org/10.1016/j.str.2020.11.016
  • Primary Citation Related Structures: 
    7CQH, 7CQP, 7CQV

  • PubMed Abstract: 

    Drosophila TRP is a calcium-permeable cation channel essential for fly visual signal transduction. During phototransduction, Ca 2+ mediates both positive and negative feedback regulation on TRP channel activity, possibly via binding to calmodulin (CaM). However, the molecular mechanism underlying Ca 2+ modulated CaM/TRP interaction is poorly understood. Here, we discover an unexpected, Ca 2+ -dependent binding mode between CaM and TRP. The TRP tail contains two CaM binding sites (CBS1 and CBS2) separated by an ∼70-residue linker. CBS1 binds to the CaM N-lobe and CBS2 recognizes the CaM C-lobe. Structural studies reveal the lobe-specific binding of CaM to CBS1&2. Mutations introduced in both CBS1 and CBS2 eliminated CaM binding in full-length TRP, but surprisingly had no effect on the response to light under physiological conditions, suggesting alternative mechanisms governing Ca 2+ -mediated feedback on the channel activity. Finally, we discover that TRPC4, the closest mammalian paralog of Drosophila TRP, adopts a similar CaM binding mode.


  • Organizational Affiliation
    • Shenzhen Key Laboratory for Neuronal Structural Biology, Biomedical Research Institute, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center, Shenzhen 518036, China; Greater Bay Biomedical Innocenter, Shenzhen Bay Laboratory, Shenzhen 518055, China.

Macromolecule Content 

  • Total Structure Weight: 13.31 kDa 
  • Atom Count: 692 
  • Modeled Residue Count: 92 
  • Deposited Residue Count: 117 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
AT15141pA [auth B]73Drosophila melanogasterMutation(s): 0 
Gene Names: Cam-RB
UniProt
Find proteins for P62152 (Drosophila melanogaster)
Explore P62152 
Go to UniProtKB:  P62152
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62152
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Transient receptor potential proteinB [auth A]44Drosophila melanogasterMutation(s): 0 
Gene Names: trpCG7875
UniProt
Find proteins for P19334 (Drosophila melanogaster)
Explore P19334 
Go to UniProtKB:  P19334
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19334
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free:  0.253 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.214 (Depositor), 0.235 (DCC) 
  • R-Value Observed: 0.216 (Depositor) 
Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.344α = 90
b = 58.344β = 90
c = 92.21γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data

  • Released Date: 2021-06-23 
  • Deposition Author(s): Shen, Z.S.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31670765
National Natural Science Foundation of China (NSFC)China31870746

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-23
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Database references, Refinement description