7CJY | pdb_00007cjy

Drimenol synthase from Persicaria hydropiper

PDB DOI: https://doi.org/10.2210/pdb7CJY/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Persicaria hydropiper
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-07-14 Released: 2021-07-14
Deposition Author(s): Xiao, W., Zhou, H., Zhou, M.T., Liu, L., Xiang, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.234 (Depositor), 0.236 (DCC)
R-Value Work:
0.195 (Depositor), 0.199 (DCC)
R-Value Observed:
0.197 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structural and Biochemical Studies of Drimenol Synthase from Persicaria hydropiper

Xiao, W., Zhou, H., Zhou, M.T., Liu, L., Xiang, Z.

To be published.

Macromolecule Content

Total Structure Weight: 125.99 kDa
Atom Count: 8,908
Modeled Residue Count: 1,080
Deposited Residue Count: 1,084
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
(-)-drimenol synthase	A, B	542	Persicaria hydropiper	Mutation(s): 0 EC: 4.2.3.194
UniProt
Find proteins for W0FFD7 (Persicaria hydropiper) Explore W0FFD7 Go to UniProtKB: W0FFD7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	W0FFD7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.234 (Depositor), 0.236 (DCC)
R-Value Work: 0.195 (Depositor), 0.199 (DCC)
R-Value Observed: 0.197 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 232.53	α = 90
b = 60.09	β = 111.875
c = 106.22	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
XDS	data processing
PHASER	phasing
PHENIX	refinement
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-07-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-07-14
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.