7CI2 | pdb_00007ci2

Crystal structure of AcrVA2 in complex with partial MbCpf1

PDB DOI: https://doi.org/10.2210/pdb7CI2/pdb

Classification: HYDROLASE
Organism(s): Moraxella bovoculi
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-07-07 Released: 2020-10-14
Deposition Author(s): Chen, P., Cheng, Z., Wang, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.268 (Depositor), 0.265 (DCC)
R-Value Work:
0.245 (Depositor), 0.242 (DCC)
R-Value Observed:
0.246 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7CI2

This is version 1.3 of the entry. See complete history.

Literature

Structural Study on Anti-CRISPR Protein AcrVA2

Chen, P., Sun, W., Cheng, Z., Yang, J., Wang, M., Wang, J., Chen, H., Liu, L., Wang, Y.

(2021) PROG BIOCHEM BIOPHYS

DOI: https://doi.org/10.16476/j.pibb.2020.0223

Macromolecule Content

Total Structure Weight: 81.31 kDa
Atom Count: 5,336
Modeled Residue Count: 664
Deposited Residue Count: 712
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AcrVA2	A, B	323	Moraxella bovoculi	Mutation(s): 0
UniProt
Find proteins for A0A7M4DUH0 (Moraxella bovoculi) Explore A0A7M4DUH0 Go to UniProtKB: A0A7M4DUH0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A7M4DUH0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MbCpf1	C, D	33	Moraxella bovoculi	Mutation(s): 0 Gene Names: AAX07_00205

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.268 (Depositor), 0.265 (DCC)
R-Value Work: 0.245 (Depositor), 0.242 (DCC)
R-Value Observed: 0.246 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.816	α = 90
b = 90.816	β = 90
c = 137.679	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-10-14

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	91440201
National Natural Science Foundation of China (NSFC)	China	31700662

Revision History (Full details and data files)

Version 1.0: 2020-10-14
Type: Initial release
Version 1.1: 2020-10-28
Changes: Database references
Version 1.2: 2021-04-28
Changes: Database references
Version 1.3: 2023-11-29
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.