7CGN

The overall structure of the MlaFEDB complex in ATP-bound EQtall conformation (Mutation of E170Q on MlaF)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.2 of the entry. See complete history


Literature

Structural mechanism of phospholipids translocation by MlaFEDB complex.

Chi, X.Fan, Q.Zhang, Y.Liang, K.Wan, L.Zhou, Q.Li, Y.

(2020) Cell Res 30: 1127-1135

  • DOI: https://doi.org/10.1038/s41422-020-00404-6
  • Primary Citation of Related Structures:  
    7CGE, 7CGN, 7CH0

  • PubMed Abstract: 

    In Gram-negative bacteria, phospholipids are major components of the inner membrane and the inner leaflet of the outer membrane, playing an essential role in forming the unique dual-membrane barrier to exclude the entry of most antibiotics. Understanding the mechanisms of phospholipid translocation between the inner and outer membrane represents one of the major challenges surrounding bacterial phospholipid homeostasis. The conserved MlaFEDB complex in the inner membrane functions as an ABC transporter to drive the translocation of phospholipids between the inner membrane and the periplasmic protein MlaC. However, the mechanism of phospholipid translocation remains elusive. Here we determined three cryo-EM structures of MlaFEDB from Escherichia coli in its nucleotide-free and ATP-bound conformations, and performed extensive functional studies to verify and extend our findings from structural analyses. Our work reveals unique structural features of the entire MlaFEDB complex, six well-resolved phospholipids in three distinct cavities, and large-scale conformational changes upon ATP binding. Together, these findings define the cycle of structural rearrangement of MlaFEDB in action, and suggest that MlaFEDB uses an extrusion mechanism to extract and release phospholipids through the central translocation cavity.


  • Organizational Affiliation

    Center for Infectious Disease Research, Zhejiang Provincial Laboratory of Life Sciences and Biomedicine, Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, 310024, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lipid asymmetry maintenance ABC transporter permease subunit MlaE
A, D
260Escherichia coli K-12Mutation(s): 0 
Gene Names: mlaEFAZ83_04790
Membrane Entity: Yes 
UniProt
Find proteins for P64606 (Escherichia coli (strain K12))
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Go to UniProtKB:  P64606
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP64606
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Phospholipid ABC transporter ATP-binding protein MlaF
B, E
269Escherichia coli K-12Mutation(s): 1 
Gene Names: mlaFFAZ83_04795
EC: 7.6.2
Membrane Entity: Yes 
UniProt
Find proteins for P63386 (Escherichia coli (strain K12))
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Go to UniProtKB:  P63386
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UniProt GroupP63386
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Lipid asymmetry maintenance protein MlaB
C, F
97Escherichia coli K-12Mutation(s): 0 
Gene Names: mlaBFAZ83_04775
UniProt
Find proteins for P64602 (Escherichia coli (strain K12))
Explore P64602 
Go to UniProtKB:  P64602
Entity Groups  
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UniProt GroupP64602
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane lipid asymmetry maintenance protein MlaD
G, H, I, J, K
G, H, I, J, K, L
183Escherichia coli K-12Mutation(s): 0 
Gene Names: mlaDFAZ83_04785
Membrane Entity: Yes 
UniProt
Find proteins for P64604 (Escherichia coli (strain K12))
Explore P64604 
Go to UniProtKB:  P64604
Entity Groups  
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UniProt GroupP64604
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.6

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31930059

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-09
    Type: Initial release
  • Version 1.1: 2020-09-16
    Changes: Database references
  • Version 1.2: 2020-10-21
    Changes: Structure summary
  • Version 2.0: 2020-11-18
    Type: Coordinate replacement
    Reason: Model orientation/position
    Changes: Atomic model, Data collection, Derived calculations, Source and taxonomy
  • Version 2.1: 2020-12-23
    Changes: Database references
  • Version 2.2: 2024-03-27
    Changes: Data collection, Database references