Mechanistic Insights into the Interactions of Ras Subfamily GTPases with the SPN Domain of Autism-associated SHANK3.
Xu, X.L., Liu, J.P., Wang, Y.L., Wang, Y., Gong, X., Pan, L.F.(2020) Chin J Chem 38: 1635-1641
Experimental Data Snapshot
Starting Models: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ras-related protein Rap-1b | 167 | Homo sapiens | Mutation(s): 2  Gene Names: RAP1B, OK/SW-cl.11 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61224 (Homo sapiens) Explore P61224  Go to UniProtKB:  P61224 | |||||
PHAROS:  P61224 GTEx:  ENSG00000127314  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61224 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SH3 and multiple ankyrin repeat domains protein 3 | 99 | Homo sapiens | Mutation(s): 0  | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BYB0 (Homo sapiens) Explore Q9BYB0  Go to UniProtKB:  Q9BYB0 | |||||
PHAROS:  Q9BYB0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9BYB0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GTP (Subject of Investigation/LOI) Query on GTP | E [auth A], H [auth B] | GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N | |||
CA Query on CA | F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | G [auth A], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 48.502 | α = 90 |
b = 55.619 | β = 90 |
c = 189.884 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | 21822705 |