7BQE

Solution NMR structure of NF3; de novo designed protein with a novel fold

PDB DOI: https://doi.org/10.2210/pdb7BQE/pdb
BMRB: 36334

Classification: DE NOVO PROTEIN
Organism(s): synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-03-24 Released: 2021-03-24
Deposition Author(s): Kobayashi, N., Sugiki, T., Fujiwara, T., Minami, S., Koga, R., Chikenji, G., Koga, N.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Japan Agency for Medical Research and Development (AMED)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Exploration of novel alpha-beta-protein folds through de novo design

Minami, S., Kobayashi, N., Sugiki, T., Nagashima, T., Fujiwara, T., Koga, R., Chikenji, G., Koga, N.

(2023) Nat Struct Mol Biol

DOI: https://doi.org/10.1038/s41594-023-01029-0

Macromolecule Content

Total Structure Weight: 13 kDa
Atom Count: 914
Modelled Residue Count: 110
Deposited Residue Count: 110
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NF3	A	110	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-03-24

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	18K06152
Japan Agency for Medical Research and Development (AMED)	Japan	JP19am0101072
Japan Society for the Promotion of Science (JSPS)	Japan	18H05420
Japan Society for the Promotion of Science (JSPS)	Japan	15H05592
Japan Society for the Promotion of Science (JSPS)	Japan	19H03166

Revision History (Full details and data files)

Version 1.0: 2021-03-24
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2023-07-05
Changes: Database references
Version 1.3: 2024-05-15
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.