7BQA | pdb_00007bqa

Crystal structure of ASFV p35

• PDB DOI: https://doi.org/10.2210/pdb7BQA/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): African swine fever virus
• Expression System: Drosophila melanogaster
• Mutation(s): No 


• Deposited: 2020-03-24 Released: 2020-06-24 
• Deposition Author(s): Li, G.B., Fu, D., Chen, C., Guo, Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.228 (Depositor), 0.227 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.199 (DCC) 
• R-Value Observed: 
  0.203 (Depositor) 

Literature

Crystal structure of the African swine fever virus structural protein p35 reveals its role for core shell assembly.

Li, G., Fu, D., Zhang, G., Zhao, D., Li, M., Geng, X., Sun, D., Wang, Y., Chen, C., Jiao, P., Cao, L., Guo, Y., Rao, Z.

(2020) Protein Cell 11: 600-605

• PubMed: 32519301 
• DOI: https://doi.org/10.1007/s13238-020-00730-w
• Primary Citation Related Structures: 
  7BQA

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Organizational Affiliation: 
• State Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin, 300350, China.
State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, 150001, China.
School of Life Sciences, Tianjin University, Tianjin, 300071, China.
State Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin, 300350, China. [e-mail].
State Key Laboratory of Medicinal Chemical Biology and College of Pharmacy, Nankai University, Tianjin, 300350, China. [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 78.09 kDa 
• Atom Count: 4,663 
• Modeled Residue Count: 536 
• Deposited Residue Count: 678 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60 kDa polyprotein	A [auth B], B [auth A]	339	African swine fever virus	Mutation(s): 0  Gene Names: CP530R, AFSV47Ss_0139
UniProt
Find proteins for Q65179 (African swine fever virus (strain Badajoz 1971 Vero-adapted)) Explore Q65179  Go to UniProtKB:  Q65179

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.228 (Depositor), 0.227 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.199 (DCC) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.068	α = 90
b = 89.563	β = 89.95
c = 65.08	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2020-06-24 
Deposition Author(s): Li, G.B., Fu, D., Chen, C., Guo, Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31670731
National Natural Science Foundation of China (NSFC)	China	31870733
National Natural Science Foundation of China (NSFC)	China	31941011

Revision History  

• Version 1.0: 2020-06-24
  Type: Initial release
  
• Version 1.1: 2021-05-05
  Changes: Database references
• Version 1.2: 2024-11-20
  Changes: Data collection, Database references, Structure summary