7BLF

Crystal structure of ene-reductase OYE4 from Botryotinia fuckeliana (BfOYE4)

PDB DOI: https://doi.org/10.2210/pdb7BLF/pdb

Classification: OXIDOREDUCTASE
Organism(s): Botrytis cinerea B05.10
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-01-18 Released: 2022-07-13
Deposition Author(s): Robescu, M.S., Bergantino, E., Hall, M., Cendron, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.218
R-Value Work: 0.181
R-Value Observed: 0.183

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Asymmetric Proton Transfer Catalysis by Stereocomplementary Old Yellow Enzymes for C=C Bond Isomerization Reaction

Robescu, M.S., Cendron, L., Bacchin, A., Wagner, K., Reiter, T., Janicki, I., Merusic, K., Illek, M., Aleotti, M., Bergantino, E., Hall, M.

(2022) ACS Catal 12: 7396-7405

DOI: https://doi.org/10.1021/acscatal.2c01110

Macromolecule Content

Total Structure Weight: 100.2 kDa
Atom Count: 6,786
Modelled Residue Count: 810
Deposited Residue Count: 910
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxidored_FMN domain-containing protein	A, B	455	Botrytis cinerea B05.10	Mutation(s): 0 Gene Names: BCIN_13g05380
UniProt
Find proteins for A0A384K246 (Botryotinia fuckeliana (strain B05.10)) Explore A0A384K246 Go to UniProtKB: A0A384K246
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A384K246
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN (Subject of Investigation/LOI) Query on FMN Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B] mmCIF format, chain C [auth A] mmCIF format, chain E [auth B]	C [auth A], E [auth B]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
FMT Query on FMT Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B]	D [auth A], F [auth B]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.218
R-Value Work: 0.181
R-Value Observed: 0.183
Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.04	α = 90
b = 92.061	β = 90
c = 161.998	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2022-07-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-07-13
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.