7BFC | pdb_00007bfc

Circular permutant of ribosomal protein S6, P54-55 truncated,

PDB DOI: https://doi.org/10.2210/pdb7BFC/pdb

Classification: RIBOSOMAL PROTEIN
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2021-01-02 Released: 2022-07-13
Deposition Author(s): Wang, H., Logan, D.T., Oliveberg, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free:
0.267 (Depositor), 0.270 (DCC)
R-Value Work:
0.227 (Depositor), 0.231 (DCC)
R-Value Observed:
0.229 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Circular permutant of ribosomal protein S6

Wang, H., Logan, D.T., Oliveberg, M.

To be published.

Macromolecule Content

Total Structure Weight: 141.84 kDa
Atom Count: 10,174
Modeled Residue Count: 1,200
Deposited Residue Count: 1,204
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S6,30S ribosomal protein S6	A [auth C] B [auth N] C [auth B] D [auth M] E [auth A] A [auth C], B [auth N], C [auth B], D [auth M], E [auth A], F [auth D], G [auth E], H [auth I], I [auth G], J [auth H], K [auth J], L [auth K], M [auth L], N [auth F]	86	Thermus thermophilus HB8	Mutation(s): 0 Gene Names: rpsF, TTHA0245
UniProt
Find proteins for Q5SLP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLP8 Go to UniProtKB: Q5SLP8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SLP8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free: 0.267 (Depositor), 0.270 (DCC)
R-Value Work: 0.227 (Depositor), 0.231 (DCC)
R-Value Observed: 0.229 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.381	α = 90
b = 73.582	β = 99.98
c = 115.796	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2022-07-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-07-13
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description
Version 1.2: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.