7B72 | pdb_00007b72

DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer

• PDB DOI: https://doi.org/10.2210/pdb7B72/pdb
• BMRB: 34581
• NAKB: 7B72

• Classification: DNA
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 2020-12-09 Released: 2021-01-13 
• Deposition Author(s): Lomzov, A.A., Pyshnyi, D.V., Shernuykov, A.V., Apukhtina, V.S.
• Funding Organization(s): Russian Science Foundation, Ministry of Education and Science of the Russian Federation

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Literature

DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer

Lomzov, A.A., Pyshnyi, D.V., Shernuykov, A.V., Apukhtina, V.S.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 6.19 kDa 
• Atom Count: 411 
• Modeled Residue Count: 20 
• Deposited Residue Count: 20 
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3')	A	10	synthetic construct

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(RGT)P*G)-3')	B	10	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 10 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2021-01-13 
Deposition Author(s): Lomzov, A.A., Pyshnyi, D.V., Shernuykov, A.V., Apukhtina, V.S.

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Funding Organization	Location	Grant Number
Russian Science Foundation	Russian Federation	18-14-00357
Ministry of Education and Science of the Russian Federation	Russian Federation	A-0309-2016-0004

Revision History  

• Version 1.0: 2021-01-13
  Type: Initial release
  
• Version 2.0: 2021-08-04
  Changes: Derived calculations, Non-polymer description, Structure summary
• Version 2.1: 2023-06-14
  Changes: Database references, Other
• Version 3.0: 2023-08-23
  Changes: Data collection, Derived calculations, Non-polymer description, Polymer sequence, Structure summary