Crystal structure of a shortened IpgC variant in complex with 3-amino-5-(pyrrolidin-1-yl)-1H-pyrazole-4-carbonitrile
Gardonyi, M., Heine, A., Klebe, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chaperone protein IpgC | 143 | Shigella flexneri | Mutation(s): 0  Gene Names: ipgC, ippI, CP0129 | ||
UniProt | |||||
Find proteins for P0A2U4 (Shigella flexneri) Explore P0A2U4  Go to UniProtKB:  P0A2U4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A2U4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
E9Q Query on E9Q | G [auth B] | 5-azanyl-3-pyrrolidin-1-yl-1~{H}-pyrazole-4-carbonitrile C8 H11 N5 RQDSNKYYHIZWJX-UHFFFAOYSA-N | |||
DMS Query on DMS | D [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
CL Query on CL | C [auth A], E [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.517 | α = 90 |
b = 57.517 | β = 90 |
c = 159.445 | γ = 120 |
Software Name | Purpose |
---|---|
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
PHENIX | refinement |
Coot | model building |