7AOC

Schizosaccharomyces pombe RNA polymerase I (monomer)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conserved strategies of RNA polymerase I hibernation and activation.

Heiss, F.B.Daiss, J.L.Becker, P.Engel, C.

(2021) Nat Commun 12: 758-758

  • DOI: https://doi.org/10.1038/s41467-021-21031-8
  • Primary Citation of Related Structures:  
    7AOC, 7AOD, 7AOE

  • PubMed Abstract: 

    RNA polymerase (Pol) I transcribes the ribosomal RNA precursor in all eukaryotes. The mechanisms 'activation by cleft contraction' and 'hibernation by dimerization' are unique to the regulation of this enzyme, but structure-function analysis is limited to baker's yeast. To understand whether regulation by such strategies is specific to this model organism or conserved among species, we solve three cryo-EM structures of Pol I from Schizosaccharomyces pombe in different functional states. Comparative analysis of structural models derived from high-resolution reconstructions shows that activation is accomplished by a conserved contraction of the active center cleft. In contrast to current beliefs, we find that dimerization of the S. pombe polymerase is also possible. This dimerization is achieved independent of the 'connector' domain but relies on two previously undescribed interfaces. Our analyses highlight the divergent nature of Pol I transcription systems from their counterparts and suggest conservation of regulatory mechanisms among organisms.


  • Organizational Affiliation

    Regensburg Center for Biochemistry, University of Regensburg, Universitätsstraße 31, 93053, Regensburg, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit rpa11,689Schizosaccharomyces pombe 972h-Mutation(s): 0 
EC: 2.7.7.6
UniProt
Find proteins for P15398 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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UniProt GroupP15398
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Probable DNA-directed RNA polymerase I subunit RPA21,174Schizosaccharomyces pombe 972h-Mutation(s): 0 
EC: 2.7.7.6
UniProt
Find proteins for Q9P7X8 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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UniProt GroupQ9P7X8
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC1348Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for O94616 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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UniProt GroupO94616
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit rpa14147Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for Q9P7P1 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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UniProt GroupQ9P7P1
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC1210Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for Q09191 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC2142Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for P36595 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit rpa43173Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for O43036 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC3125Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for Q92399 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase I subunit RPA12119Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for O94703 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC571Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for O13877 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC2125Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for Q09177 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC463Schizosaccharomyces pombe 972h-Mutation(s): 0 
UniProt
Find proteins for P48011 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySFB 960 (TP-A8)
German Research Foundation (DFG)GermanyEN 1204/1-1

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-24
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary