7ALP | pdb_00007alp

Severe fever with thrombocytopenia syndrome virus (Phenuiviridae) L protein

PDB DOI: https://doi.org/10.2210/pdb7ALP/pdb
EM Map EMD-0828: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Phlebovirus WCH/97/HN/China/2011
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2020-10-07 Released: 2021-04-21
Deposition Author(s): Cusack, S., Rosenthal, M.
Funding Organization(s): Leibniz Association

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 7ALP

This is version 1.2 of the entry. See complete history.

Literature

Errors in the deposited SFTSV L protein structure.

Cusack, S., Rosenthal, M.

(2021) Nat Microbiol 6: 549-550

PubMed: 33927385 Search on PubMed
DOI: https://doi.org/10.1038/s41564-021-00901-3
Primary Citation Related Structures:
7ALP

Organizational Affiliation

European Molecular Biology Laboratory, Grenoble, France. cusack@embl.fr.

Macromolecule Content

Total Structure Weight: 235.76 kDa
Atom Count: 15,398
Modeled Residue Count: 1,935
Deposited Residue Count: 2,084
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Replicase	A [auth U]	2,084	Phlebovirus WCH/97/HN/China/2011	Mutation(s): 0 EC: 2.7.7.48 (PDB Primary Data), 3.1 (UniProt)
UniProt
Find proteins for I0DF35 (Dabie bandavirus) Explore I0DF35 Go to UniProtKB: I0DF35
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I0DF35
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain C [auth U] SDF format, chain B [auth U] MOL2 format, chain C [auth U] MOL2 format, chain B [auth U] mmCIF format, chain C [auth U] mmCIF format, chain B [auth U]	B [auth U], C [auth U]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth U] Focus chain C [auth U] Interactions & Density Focus chain B [auth U] Focus chain C [auth U]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-04-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Leibniz Association	Germany	K27/2017

Revision History (Full details and data files)

Version 1.0: 2021-04-21
Type: Initial release
Version 1.1: 2021-05-12
Changes: Database references
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.