Domain mobility and allosteric activation of UbiD decarboxylases
Marshall, S.A., Payne, K.A.P., Leys, D.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Phenolic acid decarboxylase | 480 | Sedimentibacter hydroxybenzoicus | Mutation(s): 0  Gene Names: shdC, ohb1 EC: 4.1.1.63 (PDB Primary Data), 4.1.1.61 (PDB Primary Data) | ||
UniProt | |||||
Find proteins for Q9S4M7 (Sedimentibacter hydroxybenzoicus) Explore Q9S4M7  Go to UniProtKB:  Q9S4M7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9S4M7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein ShdD | 58 | Sedimentibacter hydroxybenzoicus | Mutation(s): 0  Gene Names: shdD | ||
UniProt | |||||
Find proteins for Q4R102 (Sedimentibacter hydroxybenzoicus) Explore Q4R102  Go to UniProtKB:  Q4R102 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q4R102 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | R [auth a] S [auth b] T [auth c] U [auth d] V [auth e] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
NA Query on NA | M [auth A], N [auth B], O [auth C], P [auth E], Q [auth F] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 101.553 | α = 90 |
b = 200.945 | β = 90 |
c = 201.991 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
xia2 | data reduction |
xia2 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | -- |