7AA5 | pdb_00007aa5

Human TRPV4 structure in presence of 4a-PDD

PDB DOI: https://doi.org/10.2210/pdb7AA5/pdb
EM Map EMD-11690: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens, Aequorea victoria
Expression System: Baculovirus expression vector pFastBac1-HM
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD

Deposited: 2020-09-03 Released: 2021-08-18
Deposition Author(s): Botte, M., Ulrich, A.K.G., Adaixo, R., Gnutt, D., Brockmann, A., Bucher, D., Chami, M., Bocquet, M., Ebbinghaus-Kintscher, U., Puetter, V., Becker, A., Egner, U., Stahlberg, H., Hennig, M., Holton, S.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 7AA5

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structural studies of the agonist complexed human TRPV4 ion-channel reveals novel structural rearrangements resulting in an open-conformation

Botte, M., Ulrich, A.K.G., Adaixo, R., Gnutt, D., Brockmann, A., Bucher, D., Chami, M., Bocquet, M., Ebbinghaus-Kintscher, U., Puetter, V., Becker, A., Egner, U., Stahlberg, H., Hennig, M., Holton, S.J.

To be published.

Macromolecule Content

Total Structure Weight: 425.01 kDa
Atom Count: 19,697
Modeled Residue Count: 2,448
Deposited Residue Count: 3,740
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transient receptor potential cation channel subfamily V member 4,Green fluorescent protein	A, B, C, D	935	Homo sapiens, Aequorea victoria This entity is chimeric	Mutation(s): 0 Gene Names: TRPV4, VRL2, VROAC, GFP Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P42212 (Aequorea victoria) Explore P42212 Go to UniProtKB: P42212
Find proteins for Q9HBA0 (Homo sapiens) Explore Q9HBA0 Go to UniProtKB: Q9HBA0
PHAROS: Q9HBA0 GTEx: ENSG00000111199
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	P42212 Q9HBA0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.18 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2021-08-18

Deposition Author(s):

Ebbinghaus-Kintscher, U.

Revision History (Full details and data files)

Version 1.0: 2021-08-18
Type: Initial release
Version 1.1: 2024-07-10
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.