6V8S

Crystal structure of Ara h 8.0201

PDB DOI: https://doi.org/10.2210/pdb6V8S/pdb

Classification: ALLERGEN
Organism(s): Arachis hypogaea
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-12-12 Released: 2020-12-16
Deposition Author(s): Pote, S., Offermann, L.R., Hurlburt, B.K., McBride, J.K., Chruszcz, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.266
R-Value Work: 0.232
R-Value Observed: 0.234

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Currently 6V8S does not have a validation slider image.

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Ara h 8.0201

Pote, S., Offermann, L.R., Hurlburt, B.K., McBride, J.K., Chruszcz, M.

To be published.

Macromolecule Content

Total Structure Weight: 293.55 kDa
Atom Count: 21,480
Modelled Residue Count: 2,430
Deposited Residue Count: 2,448
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ara h 8 allergen isoform	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	153	Arachis hypogaea	Mutation(s): 0 Gene Names: Ahy_Scaffold6g108211
UniProt
Find proteins for B0YIU5 (Arachis hypogaea) Explore B0YIU5 Go to UniProtKB: B0YIU5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B0YIU5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
2AN (Subject of Investigation/LOI) Query on 2AN Download Ideal Coordinates CCD File SDF format, chain AA [auth C] SDF format, chain AB [auth F] SDF format, chain AC [auth J] SDF format, chain AD [auth N] SDF format, chain BA [auth C] SDF format, chain BB [auth F] SDF format, chain BC [auth J] SDF format, chain BD [auth N] SDF format, chain CA [auth C] SDF format, chain CB [auth F] SDF format, chain CC [auth J] SDF format, chain CD [auth O] SDF format, chain DA [auth C] SDF format, chain DB [auth G] SDF format, chain DC [auth J] SDF format, chain DD [auth O] SDF format, chain EA [auth C] SDF format, chain EB [auth G] SDF format, chain EC [auth K] SDF format, chain ED [auth O] SDF format, chain FA [auth C] SDF format, chain FB [auth G] SDF format, chain FC [auth K] SDF format, chain FD [auth O] SDF format, chain GA [auth C] SDF format, chain GB [auth G] SDF format, chain GC [auth K] SDF format, chain GD [auth P] SDF format, chain HA [auth C] SDF format, chain HB [auth G] SDF format, chain HC [auth K] SDF format, chain HD [auth P] SDF format, chain IA [auth D] SDF format, chain IB [auth G] SDF format, chain IC [auth K] SDF format, chain ID [auth P] SDF format, chain JA [auth D] SDF format, chain JB [auth H] SDF format, chain JC [auth K] SDF format, chain JD [auth P] SDF format, chain KA [auth D] SDF format, chain KB [auth H] SDF format, chain KC [auth K] SDF format, chain KD [auth P] SDF format, chain LA [auth D] SDF format, chain LB [auth H] SDF format, chain LC [auth L] SDF format, chain LD [auth P] SDF format, chain MA [auth D] SDF format, chain MB [auth H] SDF format, chain MC [auth L] SDF format, chain MD [auth P] SDF format, chain NA [auth D] SDF format, chain NB [auth H] SDF format, chain NC [auth L] SDF format, chain ND [auth P] SDF format, chain OA [auth E] SDF format, chain OB [auth H] SDF format, chain OC [auth L] SDF format, chain OD [auth P] SDF format, chain PA [auth E] SDF format, chain PB [auth H] SDF format, chain PC [auth M] SDF format, chain Q [auth A] SDF format, chain QA [auth E] SDF format, chain QB [auth H] SDF format, chain QC [auth M] SDF format, chain R [auth A] SDF format, chain RA [auth E] SDF format, chain RB [auth H] SDF format, chain RC [auth M] SDF format, chain S [auth A] SDF format, chain SA [auth E] SDF format, chain SC [auth M] SDF format, chain T [auth A] SDF format, chain TA [auth E] SDF format, chain TB [auth I] SDF format, chain TC [auth M] SDF format, chain U [auth A] SDF format, chain UA [auth E] SDF format, chain UB [auth I] SDF format, chain UC [auth M] SDF format, chain V [auth B] SDF format, chain VA [auth F] SDF format, chain VB [auth I] SDF format, chain VC [auth M] SDF format, chain W [auth B] SDF format, chain WA [auth F] SDF format, chain WB [auth I] SDF format, chain WC [auth M] SDF format, chain X [auth B] SDF format, chain XA [auth F] SDF format, chain XB [auth I] SDF format, chain XC [auth M] SDF format, chain Y [auth B] SDF format, chain YA [auth F] SDF format, chain YB [auth J] SDF format, chain YC [auth N] SDF format, chain Z [auth C] SDF format, chain ZA [auth F] SDF format, chain ZB [auth J] SDF format, chain ZC [auth N] MOL2 format, chain AA [auth C] MOL2 format, chain AB [auth F] MOL2 format, chain AC [auth J] MOL2 format, chain AD [auth N] MOL2 format, chain BA [auth C] MOL2 format, chain BB [auth F] MOL2 format, chain BC [auth J] MOL2 format, chain BD [auth N] MOL2 format, chain CA [auth C] MOL2 format, chain CB [auth F] MOL2 format, chain CC [auth J] MOL2 format, chain CD [auth O] MOL2 format, chain DA [auth C] MOL2 format, chain DB [auth G] MOL2 format, chain DC [auth J] MOL2 format, chain DD [auth O] MOL2 format, chain EA [auth C] MOL2 format, chain EB [auth G] MOL2 format, chain EC [auth K] MOL2 format, chain ED [auth O] MOL2 format, chain FA [auth C] MOL2 format, chain FB [auth G] MOL2 format, chain FC [auth K] MOL2 format, chain FD [auth O] MOL2 format, chain GA [auth C] MOL2 format, chain GB [auth G] MOL2 format, chain GC [auth K] MOL2 format, chain GD [auth P] MOL2 format, chain HA [auth C] MOL2 format, chain HB [auth G] MOL2 format, chain HC [auth K] MOL2 format, chain HD [auth P] MOL2 format, chain IA [auth D] MOL2 format, chain IB [auth G] MOL2 format, chain IC [auth K] MOL2 format, chain ID [auth P] MOL2 format, chain JA [auth D] MOL2 format, chain JB [auth H] MOL2 format, chain JC [auth K] MOL2 format, chain JD [auth P] MOL2 format, chain KA [auth D] MOL2 format, chain KB [auth H] MOL2 format, chain KC [auth K] MOL2 format, chain KD [auth P] MOL2 format, chain LA [auth D] MOL2 format, chain LB [auth H] MOL2 format, chain LC [auth L] MOL2 format, chain LD [auth P] MOL2 format, chain MA [auth D] MOL2 format, chain MB [auth H] MOL2 format, chain MC [auth L] MOL2 format, chain MD [auth P] MOL2 format, chain NA [auth D] MOL2 format, chain NB [auth H] MOL2 format, chain NC [auth L] MOL2 format, chain ND [auth P] MOL2 format, chain OA [auth E] MOL2 format, chain OB [auth H] MOL2 format, chain OC [auth L] MOL2 format, chain OD [auth P] MOL2 format, chain PA [auth E] MOL2 format, chain PB [auth H] MOL2 format, chain PC [auth M] MOL2 format, chain Q [auth A] MOL2 format, chain QA [auth E] MOL2 format, chain QB [auth H] MOL2 format, chain QC [auth M] MOL2 format, chain R [auth A] MOL2 format, chain RA [auth E] MOL2 format, chain RB [auth H] MOL2 format, chain RC [auth M] MOL2 format, chain S [auth A] MOL2 format, chain SA [auth E] MOL2 format, chain SC [auth M] MOL2 format, chain T [auth A] MOL2 format, chain TA [auth E] MOL2 format, chain TB [auth I] MOL2 format, chain TC [auth M] MOL2 format, chain U [auth A] MOL2 format, chain UA [auth E] MOL2 format, chain UB [auth I] MOL2 format, chain UC [auth M] MOL2 format, chain V [auth B] MOL2 format, chain VA [auth F] MOL2 format, chain VB [auth I] MOL2 format, chain VC [auth M] MOL2 format, chain W [auth B] MOL2 format, chain WA [auth F] MOL2 format, chain WB [auth I] MOL2 format, chain WC [auth M] MOL2 format, chain X [auth B] MOL2 format, chain XA [auth F] MOL2 format, chain XB [auth I] MOL2 format, chain XC [auth M] MOL2 format, chain Y [auth B] MOL2 format, chain YA [auth F] MOL2 format, chain YB [auth J] MOL2 format, chain YC [auth N] MOL2 format, chain Z [auth C] MOL2 format, chain ZA [auth F] MOL2 format, chain ZB [auth J] MOL2 format, chain ZC [auth N] mmCIF format, chain AA [auth C] mmCIF format, chain AB [auth F] mmCIF format, chain AC [auth J] mmCIF format, chain AD [auth N] mmCIF format, chain BA [auth C] mmCIF format, chain BB [auth F] mmCIF format, chain BC [auth J] mmCIF format, chain BD [auth N] mmCIF format, chain CA [auth C] mmCIF format, chain CB [auth F] mmCIF format, chain CC [auth J] mmCIF format, chain CD [auth O] mmCIF format, chain DA [auth C] mmCIF format, chain DB [auth G] mmCIF format, chain DC [auth J] mmCIF format, chain DD [auth O] mmCIF format, chain EA [auth C] mmCIF format, chain EB [auth G] mmCIF format, chain EC [auth K] mmCIF format, chain ED [auth O] mmCIF format, chain FA [auth C] mmCIF format, chain FB [auth G] mmCIF format, chain FC [auth K] mmCIF format, chain FD [auth O] mmCIF format, chain GA [auth C] mmCIF format, chain GB [auth G] mmCIF format, chain GC [auth K] mmCIF format, chain GD [auth P] mmCIF format, chain HA [auth C] mmCIF format, chain HB [auth G] mmCIF format, chain HC [auth K] mmCIF format, chain HD [auth P] mmCIF format, chain IA [auth D] mmCIF format, chain IB [auth G] mmCIF format, chain IC [auth K] mmCIF format, chain ID [auth P] mmCIF format, chain JA [auth D] mmCIF format, chain JB [auth H] mmCIF format, chain JC [auth K] mmCIF format, chain JD [auth P] mmCIF format, chain KA [auth D] mmCIF format, chain KB [auth H] mmCIF format, chain KC [auth K] mmCIF format, chain KD [auth P] mmCIF format, chain LA [auth D] mmCIF format, chain LB [auth H] mmCIF format, chain LC [auth L] mmCIF format, chain LD [auth P] mmCIF format, chain MA [auth D] mmCIF format, chain MB [auth H] mmCIF format, chain MC [auth L] mmCIF format, chain MD [auth P] mmCIF format, chain NA [auth D] mmCIF format, chain NB [auth H] mmCIF format, chain NC [auth L] mmCIF format, chain ND [auth P] mmCIF format, chain OA [auth E] mmCIF format, chain OB [auth H] mmCIF format, chain OC [auth L] mmCIF format, chain OD [auth P] mmCIF format, chain PA [auth E] mmCIF format, chain PB [auth H] mmCIF format, chain PC [auth M] mmCIF format, chain Q [auth A] mmCIF format, chain QA [auth E] mmCIF format, chain QB [auth H] mmCIF format, chain QC [auth M] mmCIF format, chain R [auth A] mmCIF format, chain RA [auth E] mmCIF format, chain RB [auth H] mmCIF format, chain RC [auth M] mmCIF format, chain S [auth A] mmCIF format, chain SA [auth E] mmCIF format, chain SC [auth M] mmCIF format, chain T [auth A] mmCIF format, chain TA [auth E] mmCIF format, chain TB [auth I] mmCIF format, chain TC [auth M] mmCIF format, chain U [auth A] mmCIF format, chain UA [auth E] mmCIF format, chain UB [auth I] mmCIF format, chain UC [auth M] mmCIF format, chain V [auth B] mmCIF format, chain VA [auth F] mmCIF format, chain VB [auth I] mmCIF format, chain VC [auth M] mmCIF format, chain W [auth B] mmCIF format, chain WA [auth F] mmCIF format, chain WB [auth I] mmCIF format, chain WC [auth M] mmCIF format, chain X [auth B] mmCIF format, chain XA [auth F] mmCIF format, chain XB [auth I] mmCIF format, chain XC [auth M] mmCIF format, chain Y [auth B] mmCIF format, chain YA [auth F] mmCIF format, chain YB [auth J] mmCIF format, chain YC [auth N] mmCIF format, chain Z [auth C] mmCIF format, chain ZA [auth F] mmCIF format, chain ZB [auth J] mmCIF format, chain ZC [auth N]	AA [auth C] AB [auth F] AC [auth J] AD [auth N] BA [auth C] AA [auth C], AB [auth F], AC [auth J], AD [auth N], BA [auth C], BB [auth F], BC [auth J], BD [auth N], CA [auth C], CB [auth F], CC [auth J], CD [auth O], DA [auth C], DB [auth G], DC [auth J], DD [auth O], EA [auth C], EB [auth G], EC [auth K], ED [auth O], FA [auth C], FB [auth G], FC [auth K], FD [auth O], GA [auth C], GB [auth G], GC [auth K], GD [auth P], HA [auth C], HB [auth G], HC [auth K], HD [auth P], IA [auth D], IB [auth G], IC [auth K], ID [auth P], JA [auth D], JB [auth H], JC [auth K], JD [auth P], KA [auth D], KB [auth H], KC [auth K], KD [auth P], LA [auth D], LB [auth H], LC [auth L], LD [auth P], MA [auth D], MB [auth H], MC [auth L], MD [auth P], NA [auth D], NB [auth H], NC [auth L], ND [auth P], OA [auth E], OB [auth H], OC [auth L], OD [auth P], PA [auth E], PB [auth H], PC [auth M], Q [auth A], QA [auth E], QB [auth H], QC [auth M], R [auth A], RA [auth E], RB [auth H], RC [auth M], S [auth A], SA [auth E], SC [auth M], T [auth A], TA [auth E], TB [auth I], TC [auth M], U [auth A], UA [auth E], UB [auth I], UC [auth M], V [auth B], VA [auth F], VB [auth I], VC [auth M], W [auth B], WA [auth F], WB [auth I], WC [auth M], X [auth B], XA [auth F], XB [auth I], XC [auth M], Y [auth B], YA [auth F], YB [auth J], YC [auth N], Z [auth C], ZA [auth F], ZB [auth J], ZC [auth N]	8-ANILINO-1-NAPHTHALENE SULFONATE C₁₆ H₁₃ N O₃ S FWEOQOXTVHGIFQ-UHFFFAOYSA-N		Interactions Focus chain AA [auth C] Focus chain AB [auth F] Focus chain AC [auth J] Focus chain AD [auth N] Focus chain BA [auth C] Focus chain BB [auth F] Focus chain BC [auth J] Focus chain BD [auth N] Focus chain CA [auth C] Focus chain CB [auth F] Focus chain CC [auth J] Focus chain CD [auth O] Focus chain DA [auth C] Focus chain DB [auth G] Focus chain DC [auth J] Focus chain DD [auth O] Focus chain EA [auth C] Focus chain EB [auth G] Focus chain EC [auth K] Focus chain ED [auth O] Focus chain FA [auth C] Focus chain FB [auth G] Focus chain FC [auth K] Focus chain FD [auth O] Focus chain GA [auth C] Focus chain GB [auth G] Focus chain GC [auth K] Focus chain GD [auth P] Focus chain HA [auth C] Focus chain HB [auth G] Focus chain HC [auth K] Focus chain HD [auth P] Focus chain IA [auth D] Focus chain IB [auth G] Focus chain IC [auth K] Focus chain ID [auth P] Focus chain JA [auth D] Focus chain JB [auth H] Focus chain JC [auth K] Focus chain JD [auth P] Focus chain KA [auth D] Focus chain KB [auth H] Focus chain KC [auth K] Focus chain KD [auth P] Focus chain LA [auth D] Focus chain LB [auth H] Focus chain LC [auth L] Focus chain LD [auth P] Focus chain MA [auth D] Focus chain MB [auth H] Focus chain MC [auth L] Focus chain MD [auth P] Focus chain NA [auth D] Focus chain NB [auth H] Focus chain NC [auth L] Focus chain ND [auth P] Focus chain OA [auth E] Focus chain OB [auth H] Focus chain OC [auth L] Focus chain OD [auth P] Focus chain PA [auth E] Focus chain PB [auth H] Focus chain PC [auth M] Focus chain Q [auth A] Focus chain QA [auth E] Focus chain QB [auth H] Focus chain QC [auth M] Focus chain R [auth A] Focus chain RA [auth E] Focus chain RB [auth H] Focus chain RC [auth M] Focus chain S [auth A] Focus chain SA [auth E] Focus chain SC [auth M] Focus chain T [auth A] Focus chain TA [auth E] Focus chain TB [auth I] Focus chain TC [auth M] Focus chain U [auth A] Focus chain UA [auth E] Focus chain UB [auth I] Focus chain UC [auth M] Focus chain V [auth B] Focus chain VA [auth F] Focus chain VB [auth I] Focus chain VC [auth M] Focus chain W [auth B] Focus chain WA [auth F] Focus chain WB [auth I] Focus chain WC [auth M] Focus chain X [auth B] Focus chain XA [auth F] Focus chain XB [auth I] Focus chain XC [auth M] Focus chain Y [auth B] Focus chain YA [auth F] Focus chain YB [auth J] Focus chain YC [auth N] Focus chain Z [auth C] Focus chain ZA [auth F] Focus chain ZB [auth J] Focus chain ZC [auth N]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain SB [auth H] MOL2 format, chain SB [auth H] mmCIF format, chain SB [auth H]	SB [auth H]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain SB [auth H]