6QEK | pdb_00006qek

Putative membrane tansporter, magnetosome protein MamM CTD [Desulfamplus magnetovallimortis BW-1]

PDB DOI: https://doi.org/10.2210/pdb6QEK/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Desulfamplus magnetovallimortis BW-1
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2019-01-08 Released: 2019-01-23
Deposition Author(s): Keren, N.K., Zarivach, R.Z.
Funding Organization(s): Israel Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.272 (Depositor), 0.308 (DCC)
R-Value Work:
0.207 (Depositor), 0.246 (DCC)
R-Value Observed:
0.210 (Depositor)

Starting Model: other
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Putative membrane tansporter, magnetosome protein MamM CTD [Desulfamplus magnetovallimortis BW-1]

Keren, N.K., Zarivach, R.Z.

To be published.

Macromolecule Content

Total Structure Weight: 17.84 kDa
Atom Count: 1,247
Modeled Residue Count: 155
Deposited Residue Count: 158
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Magnetosome protein	A, B	79	Desulfamplus magnetovallimortis BW-1	Mutation(s): 0 Gene Names: mamM
UniProt
Find proteins for G8IQT5 (Desulfamplus magnetovallimortis BW-1) Explore G8IQT5 Go to UniProtKB: G8IQT5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G8IQT5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.272 (Depositor), 0.308 (DCC)
R-Value Work: 0.207 (Depositor), 0.246 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.019	α = 90
b = 47.019	β = 90
c = 130.463	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2019-01-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Israel Science Foundation	Israel	167/16

Revision History (Full details and data files)

Version 1.0: 2019-01-23
Type: Initial release
Version 1.1: 2024-05-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.