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Putative membrane tansporter, magnetosome protein MamM CTD [Desulfamplus magnetovallimortis BW-1]
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other MamM CTD MSR-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 293 25% PEG 3,350
0.1M BIS-TRIS pH 5.5
0.2M Sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.33 47.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.019 α = 90 b = 47.019 β = 90 c = 130.463 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.977 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 40.72 99.7 0.057 11.4 4.9 13784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MamM CTD MSR-1 1.95 40.72 11291 574 99.91 0.20958 0.20668 0.2462 0.2716 0.3076 RANDOM 42.845
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.81 2.81 -5.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.084 r_dihedral_angle_4_deg 27.749 r_dihedral_angle_3_deg 17.284 r_long_range_B_refined 8.831 r_long_range_B_other 8.824 r_scangle_other 7.22 r_dihedral_angle_1_deg 7.054 r_mcangle_it 5.386 r_mcangle_other 5.383 r_scbond_it 4.866
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.084 r_dihedral_angle_4_deg 27.749 r_dihedral_angle_3_deg 17.284 r_long_range_B_refined 8.831 r_long_range_B_other 8.824 r_scangle_other 7.22 r_dihedral_angle_1_deg 7.054 r_mcangle_it 5.386 r_mcangle_other 5.383 r_scbond_it 4.866 r_scbond_other 4.862 r_mcbond_it 4.229 r_mcbond_other 4.223 r_angle_refined_deg 2.061 r_angle_other_deg 1.122 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1197 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data scaling PHASER phasing