6Q08 | pdb_00006q08

Synoeca peptide was isolated from the venom of wasp synoeca surinama.

• PDB DOI: https://doi.org/10.2210/pdb6Q08/pdb
• BMRB: 30650

• Classification: ANTIMICROBIAL PROTEIN
• Organism(s): Synoeca surinama
• Mutation(s): No 


• Deposited: 2019-08-01 Released: 2020-08-05 
• Deposition Author(s): Alves, E.S., Rodrigues, L.V., Liao, L.M.

---

Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Literature

NMR STRUCTURE OF THE ANTIMICROBIAL PEPTIDE ISOLATED FROM THE VENOM OF WASP Synoeca Surinama.

Alves, E.S.F., Rodrigues, L.V., Liao, L.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: mass spectrometry

Macromolecule Content 

• Total Structure Weight: 1.6 kDa 
• Atom Count: 112 
• Modeled Residue Count: 14 
• Deposited Residue Count: 15 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Synoeca peptide	A	15	Synoeca surinama	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-08-05 
Deposition Author(s): Alves, E.S., Rodrigues, L.V., Liao, L.M.

Revision History  

• Version 1.0: 2020-08-05
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Database references, Other
• Version 1.2: 2024-05-15
  Changes: Data collection, Database references
• Version 1.3: 2024-10-30
  Changes: Structure summary