6G4L
17beta-hydroxysteroid Dehydrogenase Type 14 Mutant Y253A in Complex With a Non-steroidal Inhibitor
- PDB DOI: https://doi.org/10.2210/pdb6G4L/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): Yes 
- Deposited: 2018-03-27 Released: 2019-04-10 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.44 Å
- R-Value Free: 0.179 
- R-Value Work: 0.156 
- R-Value Observed: 0.158 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
17-beta-hydroxysteroid dehydrogenase 14 | 270 | Homo sapiens | Mutation(s): 1  Gene Names: HSD17B14, DHRS10, SDR3, SDR47C1, UNQ502/PRO474 EC: 1.1.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BPX1 (Homo sapiens) Explore Q9BPX1  Go to UniProtKB:  Q9BPX1 | |||||
PHAROS:  Q9BPX1 GTEx:  ENSG00000087076  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9BPX1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAD Query on NAD | B [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N | |||
F45 Query on F45 | E [auth A] | [6-(3,4-dihydroxyphenyl)pyridin-2-yl](4-fluoro-3-hydroxyphenyl)methanone C18 H12 F N O4 USZFAGSFWNNZLX-UHFFFAOYSA-N | |||
BGC Query on BGC | D [auth A] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N | |||
DMS Query on DMS | F [auth A], G [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.44 Å
- R-Value Free: 0.179 
- R-Value Work: 0.156 
- R-Value Observed: 0.158 
- Space Group: I 4 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 91.423 | α = 90 |
b = 91.423 | β = 90 |
c = 132.141 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2019-04-10  Deposition Author(s): Badran, M., Klebe, G., Heine, A., Marchais-Oberwinkler, S.
Revision History (Full details and data files)
- Version 1.0: 2019-04-10
Type: Initial release - Version 1.1: 2020-04-22
Changes: Data collection, Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2024-01-17
Changes: Data collection, Database references, Refinement description, Structure summary