Crystal structure of LpxC from Pseudomonas aeruginosa in complex with ligand PT802
Delker, S.L., Mayclin, S.J., Phan, J.N., Abendroth, J., Lorimer, D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
UDP-3-O-acyl-N-acetylglucosamine deacetylase | 304 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0  Gene Names: lpxC, envA, PA4406 EC: 3.5.1.108 | ||
UniProt | |||||
Find proteins for P47205 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P47205  Go to UniProtKB:  P47205 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P47205 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
JCG Query on JCG | C [auth A] | (2R)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide C24 H25 F N2 O6 S RPIBMYVEZQVKQW-XMMPIXPASA-N | |||
HUM Query on HUM | B [auth A] | (2S)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide C24 H25 F N2 O6 S RPIBMYVEZQVKQW-DEOSSOPVSA-N | |||
ZN Query on ZN | D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CA Query on CA | E [auth A], F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | G [auth A], H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 35.64 | α = 111.68 |
b = 47.74 | β = 107.87 |
c = 48.35 | γ = 99.27 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
MOLREP | phasing |
XDS | data collection |