Functional and structural characterization of the Trm11-Trm112 m2G10 tRNA methyltransferase complex
Wang, C., Tran, N.V., Jactel, V., Guerineau, V., Graille, M.(2020) Nucleic Acids Res 
Experimental Data Snapshot
Starting Model: experimental
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(2020) Nucleic Acids Res 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
tRNA (Guanine(10)-N2)-dimethyltransferase | A [auth G] | 326 | Archaeoglobus fulgidus | Mutation(s): 0  Gene Names: XD40_1676, XD48_1558 EC: 2.1.1.213 | |
UniProt | |||||
Find proteins for O29011 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O29011  Go to UniProtKB:  O29011 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O29011 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uncharacterized protein | B [auth H] | 60 | Archaeoglobus fulgidus | Mutation(s): 0  Gene Names: XD40_0284, XD48_0149 | |
UniProt | |||||
Find proteins for A0A117KMN5 (Archaeoglobus fulgidus) Explore A0A117KMN5  Go to UniProtKB:  A0A117KMN5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A117KMN5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SFG Query on SFG | C [auth G] | SINEFUNGIN C15 H23 N7 O5 LMXOHSDXUQEUSF-YECHIGJVSA-N | |||
SO4 Query on SO4 | P [auth G], Q [auth G] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | R [auth H] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | D [auth G] E [auth G] F [auth G] G H [auth G] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACY Query on ACY | J [auth G], K [auth G] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 75.36 | α = 90 |
b = 92.94 | β = 90 |
c = 101.4 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
BUSTER | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |