6ZE0 | pdb_00006ze0

Orthorhombic crystal structure of the bulky-bulky ketone specific alcohol dehydrogenase from Comamonas testosteroni

• PDB DOI: https://doi.org/10.2210/pdb6ZE0/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Comamonas sp. 26
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-06-15 Released: 2020-11-11 
• Deposition Author(s): Toelzer, C., Niefind, K.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free: 
  0.240 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.199 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.200 (Depositor) 

Starting Model: experimental

Literature

Expanding the Application Range of Microbial Oxidoreductases by an Alcohol Dehydrogenase from Comamonas testosteroni with a Broad Substrate Spectrum and pH Profile

Bakonyi, D., Toelzer, C., Stricker, M., Hummel, W., Niefind, K., Groger, H.

(2020) Catalysts 

• DOI: https://doi.org/10.3390/catal10111281

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 88.58 kDa 
• Atom Count: 6,167 
• Modelled Residue Count: 750 
• Deposited Residue Count: 810 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
alcohol dehydrogenase	A, B, C	270	Comamonas sp. 26	Mutation(s): 0  Gene Names: CLU84_2013
UniProt
Find proteins for A0A2G6ZQ46 (Comamonas sp. 26) Explore A0A2G6ZQ46  Go to UniProtKB:  A0A2G6ZQ46

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free:  0.240 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.199 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.200 (Depositor) 

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.929	α = 90
b = 70.82	β = 90
c = 210.868	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-11-11 
Deposition Author(s): Toelzer, C., Niefind, K.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SFB635/project B07

Revision History  

• Version 1.0: 2020-11-11
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Derived calculations, Refinement description