6ZE0 | pdb_00006ze0

Orthorhombic crystal structure of the bulky-bulky ketone specific alcohol dehydrogenase from Comamonas testosteroni

PDB DOI: https://doi.org/10.2210/pdb6ZE0/pdb

Classification: OXIDOREDUCTASE
Organism(s): Comamonas sp. 26
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-06-15 Released: 2020-11-11
Deposition Author(s): Toelzer, C., Niefind, K.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free:
0.240 (Depositor), 0.237 (DCC)
R-Value Work:
0.199 (Depositor)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Expanding the Application Range of Microbial Oxidoreductases by an Alcohol Dehydrogenase from Comamonas testosteroni with a Broad Substrate Spectrum and pH Profile

Bakonyi, D., Toelzer, C., Stricker, M., Hummel, W., Niefind, K., Groger, H.

(2020) Catalysts

DOI: https://doi.org/10.3390/catal10111281

Macromolecule Content

Total Structure Weight: 88.58 kDa
Atom Count: 6,167
Modeled Residue Count: 750
Deposited Residue Count: 810
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
alcohol dehydrogenase	A, B, C	270	Comamonas sp. 26	Mutation(s): 0 Gene Names: CLU84_2013
UniProt
Find proteins for A0ACD6BA50 (Comamonas sp. 26) Explore A0ACD6BA50 Go to UniProtKB: A0ACD6BA50
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BA50
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.240 (Depositor), 0.237 (DCC)
R-Value Work: 0.199 (Depositor)
R-Value Observed: 0.200 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.929	α = 90
b = 70.82	β = 90
c = 210.868	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-11-11

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SFB635/project B07

Revision History (Full details and data files)

Version 1.0: 2020-11-11
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.