6ZBY | pdb_00006zby

Cryo-EM structure of the nitrilase from Pseudomonas fluorescens EBC191 at 3.3 Angstroms

PDB DOI: https://doi.org/10.2210/pdb6ZBY/pdb
EM Map EMD-11158: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Pseudomonas fluorescens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-06-09 Released: 2021-06-30
Deposition Author(s): Eppinger, E., Stolz, A., Sewell, B.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure of the nitrilase from Pseudomonas fluorescens EBC191 at 3.3 Angstroms

Eppinger, E., Stolz, A., Sewell, B.T.

To be published.

Macromolecule Content

Total Structure Weight: 452.89 kDa
Atom Count: 28,836
Modeled Residue Count: 3,792
Deposited Residue Count: 4,200
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NitA	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	350	Pseudomonas fluorescens	Mutation(s): 0 Gene Names: nitA
UniProt
Find proteins for Q5EG61 (Pseudomonas fluorescens) Explore Q5EG61 Go to UniProtKB: Q5EG61
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5EG61
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	ISOLDE
MODEL REFINEMENT	Coot
RECONSTRUCTION	RELION	3.1

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-06-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-06-30
Type: Initial release
Version 1.1: 2024-05-01
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.