6Z1X

Crystal structure of human steroid carrier protein SL (SCP-2L) mutant V83C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Engineering Thermostability in Artificial Metalloenzymes to Increase Catalytic Activity

Doble, M.V.Obrecht, L.Joosten, H.J.Lee, M.Rozeboom, H.J.Branigan, E.Naismith, J.H.Janssen, D.B.Jarvis, A.G.Kamer, P.C.J.

(2021) ACS Catal 11: 3620-3627


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peroxisomal multifunctional enzyme type 2120Homo sapiensMutation(s): 1 
Gene Names: HSD17B4EDH17B4SDR8C1
EC: 1.1.1 (PDB Primary Data), 4.2.1.107 (PDB Primary Data), 4.2.1.119 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P51659 (Homo sapiens)
Explore P51659 
Go to UniProtKB:  P51659
PHAROS:  P51659
GTEx:  ENSG00000133835 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP51659
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 35.69α = 90
b = 48.85β = 90
c = 63.74γ = 90
Software Package:
Software NamePurpose
HKL-2000data reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-03
    Type: Initial release
  • Version 1.1: 2021-09-15
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Refinement description