6YIP | pdb_00006yip

Structure of MKLP2 coiled coil


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 
    0.320 (Depositor), 0.314 (DCC) 
  • R-Value Work: 
    0.219 (Depositor), 0.219 (DCC) 
  • R-Value Observed: 
    0.224 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 6YIP

This is version 1.2 of the entry. See complete history

Literature

Molecular basis of MKLP2-dependent Aurora B transport from chromatin to the anaphase central spindle.

Serena, M.Bastos, R.N.Elliott, P.R.Barr, F.A.

(2020) J Cell Biol 219

  • DOI: https://doi.org/10.1083/jcb.201910059
  • Primary Citation Related Structures: 
    6YIE, 6YIF, 6YIH, 6YIP

  • PubMed Abstract: 

    The Aurora B chromosomal passenger complex (CPC) is a conserved regulator of mitosis. Its functions require localization first to the chromosome arms and then centromeres in mitosis and subsequently the central spindle in anaphase. Here, we analyze the requirements for core CPC subunits, survivin and INCENP, and the mitotic kinesin-like protein 2 (MKLP2) in targeting to these distinct localizations. Centromere recruitment of the CPC requires interaction of survivin with histone H3 phosphorylated at threonine 3, and we provide a complete structure of this assembly. Furthermore, we show that the INCENP RRKKRR-motif is required for both centromeric localization of the CPC in metaphase and MKLP2-dependent transport in anaphase. MKLP2 and DNA bind competitively to this motif, and INCENP T59 phosphorylation acts as a switch preventing MKLP2 binding in metaphase. In anaphase, CPC binding promotes the microtubule-dependent ATPase activity of MKLP2. These results explain how centromere targeting of the CPC in mitosis is coupled to its movement to the central spindle in anaphase.


  • Organizational Affiliation
    • Department of Biochemistry, University of Oxford, Oxford, UK.

Macromolecule Content 

  • Total Structure Weight: 18.21 kDa 
  • Atom Count: 1,325 
  • Modeled Residue Count: 133 
  • Deposited Residue Count: 150 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Kinesin-like protein KIF20A
A, B
75Homo sapiensMutation(s): 0 
Gene Names: KIF20AMKLP2RAB6KIFL
UniProt & NIH Common Fund Data Resources
Find proteins for O95235 (Homo sapiens)
Explore O95235 
Go to UniProtKB:  O95235
PHAROS:  O95235
GTEx:  ENSG00000112984 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO95235
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
IPA

Query on IPA



Download:Ideal Coordinates CCD File
C [auth B]ISOPROPYL ALCOHOL
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free:  0.320 (Depositor), 0.314 (DCC) 
  • R-Value Work:  0.219 (Depositor), 0.219 (DCC) 
  • R-Value Observed: 0.224 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 30.24α = 90
b = 32.925β = 90
c = 159.735γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata processing
autoPROCdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited KingdomC20079/A15940

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-13
    Type: Initial release
  • Version 1.1: 2024-01-24
    Changes: Data collection, Database references, Refinement description
  • Version 1.2: 2024-11-13
    Changes: Structure summary